Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01420 ATGCCTTTTGTTGTTCTTCGAATTTCGCAGACAAATTACGGAGACATTGAGTTCGGTTTTTTCCCTGAAGTTGCGCCGAAGACCGTCGCTCACATTTTCAAACTAGTTCGTCTTGGAGGCTATAATACCAACCATTTCTTTAGGGTGGATAAAGGGTTTGTGGCTCAAGTGGCGGATGTAGCTTCAGGAAGATCAGCTCCTATGAACGAGGAGCAGAAAAGAGAAGCTGATAAAACCATTGTTGGTGAATTTAGTACTGTCAAACATGTGAGAGGTATTCTTTCTATGGGGAGATATTCTGATCCAGACAGTGCTCAATCTTCATTTTCGATACTTCTTGGAGACGCCCCTCATCTTGATGGCCAATATGCAATATTTGGTAAAGTTACTAAAGGGGACGATACATTGAAAAAGCTTGAGGAACTCCCTACTCGAAAGGAGGGTATTTTTATTATGCCAATTGAACGTATCACAATCTTATCATCGTATTACTACGATACCGAGACAGAGAATTGTGAAGAGGATAGATCGATCTTAAAGAGGAGGCTGGCTGCATCTGCTTTCGAAATTGAAAGACAGGTGAGATAG 588 41.5 MPFVVLRISQTNYGDIEFGFFPEVAPKTVAHIFKLVRLGGYNTNHFFRVDKGFVAQVADVASGRSAPMNEEQKREADKTIVGEFSTVKHVRGILSMGRYSDPDSAQSSFSILLGDAPHLDGQYAIFGKVTKGDDTLKKLEELPTRKEGIFIMPIERITILSSYYYDTETENCEEDRSILKRRLAASAFEIERQVR 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19440333 19442271 + Bpe011083.1 Bpe13g01420 114200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01420 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 120 IPR002130 GO:0000413|GO:0003755
Bpe13g01420 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 46 58 IPR002130 GO:0000413|GO:0003755
Bpe13g01420 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Bpe13g01420 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 20 35 IPR002130 GO:0000413|GO:0003755
Bpe13g01420 195 SUPERFAMILY Cyclophilin-like 8 166 IPR029000 -
Bpe13g01420 195 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 3 164 IPR002130 GO:0000413|GO:0003755
Bpe13g01420 195 CDD cyclophilin 10 161 - -
Bpe13g01420 195 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 159 IPR002130 GO:0000413|GO:0003755
Bpe13g01420 195 Gene3D - 5 171 IPR029000 -
Bpe13g01420 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 8 194 IPR044233 -
Bpe13g01420 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 8 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01420 - - - gmx:100819238 334.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01420 Bpe-Chr13:19440333 Bpe04g01516 Bpe-Chr4:21631091 2.53E-12 dispersed
Bpe13g01420 Bpe-Chr13:19440333 Bpe07g00720 Bpe-Chr7:13765876 3.57E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g885 . Blo16g01123 . . Bpe13g01420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0601 Cone9ag0606 . . . . . . . . . . . Bma06g00677 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010068 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 2 1 0 1 1 2 1 1 1 1 1 2 1 29