Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01422 ATGACTAGCAATTGGATGGCTTTCTTCCCTGCGAATTTCATGCCACAAGCTCCCCATGAAGATGAACATCAACCTCCCTCTACTCTTAACCCAATTCTTCACCCATGTACTCCTCAAGACTTTCATGGAGTGGCATCGTTTCTTGGAAAGAGATCCATGTCGTTTTCGGGAATTGAAATGGGGGAAGAAGCAAACAATGGGGAGGACTATTTGTCGGACGATGGATCACTTGCAGGAGAGAAGAAGAGGAGGCTTAATATGGAGCAGGTGAAAACTCTTGAGAAGAACTTCGAGTTGGGAAATAAACTGGAGCCCGAGAGAAAAATGCAGTTGGCTCGAGCTCTTAATCTGCAGCCACGGCAGATTGCGATTTGGTTTCAGAATAGAAGAGCAAGGTGGAAGACGAAGCAGTTGGAGAAAGATTATGATCTTCTCAAACGACAGTTTGAAGCCATTAAAGCCGATAACGAAGCTCTACAAACCCAGAATCAAAAGCTTCAGGCAGAGATTATGGGTCTGAAAAGTAGAGAACCAACCGAATCGATCAATCTGAACAAAGAAACAGAAGGATCAAGCAGCAATCGAAGTGAAAACAGCTCCGACATAAAACTGGATATCTCCAGAACGCCCGCCATTGATAGTCCTTTACCCACGAGCAGACCTTTATTTCCGGGCGCCATTAGAGCTCCTGCTGTCGCTCAGCTCTTTCAGAACCCATCGAGATCTGAAATCCATTGCCATAAAGTAGATCAAATGGGCAAAGAAGAAAGCCTGAGCAACATGTTTTGCGGGATCGAGGATCAGTCCGGCGGACTGTGGCCATGGTTGGAGAATCAACATTTTAATTGA 849 45.47 MTSNWMAFFPANFMPQAPHEDEHQPPSTLNPILHPCTPQDFHGVASFLGKRSMSFSGIEMGEEANNGEDYLSDDGSLAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKADNEALQTQNQKLQAEIMGLKSREPTESINLNKETEGSSSNRSENSSDIKLDISRTPAIDSPLPTSRPLFPGAIRAPAVAQLFQNPSRSEIHCHKVDQMGKEESLSNMFCGIEDQSGGLWPWLENQHFN 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19482171 19483424 + Bpe011085.1 Bpe13g01422 114202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01422 282 Gene3D - 74 142 - -
Bpe13g01422 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 282 - -
Bpe13g01422 282 Coils Coil 128 176 - -
Bpe13g01422 282 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Bpe13g01422 282 SMART HOX_1 79 140 IPR001356 GO:0003677
Bpe13g01422 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 282 IPR045224 GO:0003700
Bpe13g01422 282 SUPERFAMILY Homeodomain-like 77 138 IPR009057 -
Bpe13g01422 282 MobiDBLite consensus disorder prediction 184 205 - -
Bpe13g01422 282 CDD homeodomain 81 137 IPR001356 GO:0003677
Bpe13g01422 282 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Bpe13g01422 282 MobiDBLite consensus disorder prediction 172 217 - -
Bpe13g01422 282 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Bpe13g01422 282 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe11g01633 Bpe13g01422 CCT
Bpe02g02353 Bpe13g01422 CCT
Bpe11g01633 Bpe13g01422 ECH
Bpe02g02353 Bpe13g01422 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01422 Bpe-Chr13:19482171 Bpe10g00055 Bpe-Chr10:814200 9.30E-38 dispersed
Bpe11g01633 Bpe-Chr11:12447351 Bpe13g01422 Bpe-Chr13:19482171 8.46E-129 wgd
Bpe13g01422 Bpe-Chr13:19482171 Bpe02g02353 Bpe-Chr2:24009360 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22391 PF00046 Homeodomain 6.80E-15 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01422 K09338 - qsu:112032056 454.907