Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01428 ATGCAGCGGCTACACTTGCTATCTTCTTCTTCATTTGCTTCTCCTCAAAACCCTGAAACTTGTCCTTTCCTTAAGCTTTCCTCCAACTATCCGTCTAGAAGCTTCTTTCTCAACTTCAATGCCTACCGACCTCTTCCAACTCACTCCACAAACTGGAAGCTCTCTGTGAAATGCCGGTACTCTGAGTACTTCGACCAGCAGCAGAAGAAGCAGTCGGGATTCGACGCTGGAACTTCTCCGAATAGCAATTCTGCTCCACAGTCTCGGCCTGGAGCCGCTGGGGCATTGCCAACTAGGTACTTCGTGGGTCATTCAATATACAAAGGGAAGGCAGCTCTTACGGTGGAGCCACGGGCACCAGAGTTTACTTCTCTAGATTCAGGAGCATTCAAACTATCGAAGGAGGGCGTTGTTGTTCTTCAGTTTGCTCCCGCAGCTGGTGTTCGTCAATATGATTGGAACAAAAAACAGGTATTCTCTTTGTCAGTGACAGAAATTGGGAGTCTTGTTGCCCTTGGCCCAAGAGATTCGTGTGAATTTTTCCACGACCCTTTTAAGGGAAAAAGCGAGGAAGGGAAAGTTAGGAAGGTATTGAAAGTGGAGCCCCTTCCAGATGGTTCTGGTCATTTCTTCAACATCAGTGTTCAGAACAAGCTTATCAACATGGACGAGAGTATTTATATTCCTGTCACCAAAGCAGAATACGCTGTACTTGTCTCAGCATTCAATTTTATCTTACCATATCTTCTAGGATGGCATGCCTACGCCAATTCCATCAAGCCAGAAGATTCGAACCGTGTAAATAGCGCCAATTCTAGGTATGGCGACTATGAATGGAACAAGTAG 846 45.98 MQRLHLLSSSSFASPQNPETCPFLKLSSNYPSRSFFLNFNAYRPLPTHSTNWKLSVKCRYSEYFDQQQKKQSGFDAGTSPNSNSAPQSRPGAAGALPTRYFVGHSIYKGKAALTVEPRAPEFTSLDSGAFKLSKEGVVVLQFAPAAGVRQYDWNKKQVFSLSVTEIGSLVALGPRDSCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNISVQNKLINMDESIYIPVTKAEYAVLVSAFNFILPYLLGWHAYANSIKPEDSNRVNSANSRYGDYEWNK 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19571690 19574233 - Bpe011092.1 Bpe13g01428 114208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01428 281 MobiDBLite consensus disorder prediction 71 89 - -
Bpe13g01428 281 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 48 280 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bpe13g01428 281 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 48 280 - -
Bpe13g01428 281 MobiDBLite consensus disorder prediction 71 92 - -
Bpe13g01428 281 SUPERFAMILY ssDNA-binding transcriptional regulator domain 99 279 IPR009044 GO:0003677|GO:0006355
Bpe13g01428 281 Pfam Whirly transcription factor 106 240 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bpe13g01428 281 Gene3D Transcriptional Coactivator Pc4; Chain A 93 271 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00326 Bpe-Chr4:2069687 Bpe13g01428 Bpe-Chr13:19571690 1.06E-54 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22393 PF08536 Whirly 4.60E-61 CL0609 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01428 - - mnt:112091579 379.793