Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01430 ATGGCGGAATTTGGAGTTAAGGTACTTGTTTTGTTGTTATTGGGTGTGGTAGCCAACGCTAACATCGGAAACTTTGATGATTACTGGAAAAATCGAGCCGAGGAAGCCAAATTGGCTGCTCTTGACGCATACGATCCTAACCCGGAGGCTGTTACTGATAGTTTCAACGCTCAAGTTGGCAAAGCAATTGCGGGAACGAACACCACAAGAAGAAATCTGAGGAAAAACAAAGGCCCATGCAGGGCGACGAACCCCATTGACAGGTGTTGGAGGTGCGATCCAAACTGGGCGAACAATCGGAAGAAGCTAGCCAGCTGCGTTCTGGGCTTCGGCCGGAGAACCTTCGGAGGAAAAAACGGCCGATATTACGTCGTCACTGACTCTTCCGACTCTGATCTACTTAACCCTAAACCAGGAACTCTCCGGCACGCCGTGATTCAGAATCAACCCCTCTGGATAATCTTCGCCAGAAGCATGGTAATTCGTCTGACCCAAGAGCTAATGGTGAACAGCCATAAAACCATTGACGCTCGAGGAGTCAACGTCCATATCGCGTTCGGAGCCGGAATTACGGTCCAGTTTGTGAAGAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTGCCGGCACCGGCGGACTTATCAGAGATTCCGTCGACCATTATGGGTTTAGAACAAAGAGTGATGGTGATGGAATTTCAATCTTCGGAGCTTCAAATGTTTGGATCGACCACATTTCCATGTCCAACTGCCAAGACGGACTAATCGACGCTATAATGGGGTCTACTGCTATCACCATCTCCAACTGTCACTTCACTCACCATAACGAGGTGATGCTGTTCGGAGCGAGCGACAGCTATTCCGGCGATGCAATAATGCAAGTGACGGTGGCTTTCAACCATTTCGGAAGAGGGTTAGTGCAGAGAATGCCGAGGTGCAGATGGGGCTTCTTCCACGTCGTTAACAATGATTACACCCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAGGGGAATCGCTTTATTGCACCTCACAATGCAGCTGCTAAAGAGGTGACGAAGAGGGATTATGCAACACAAGAGACGTGGAAAAACTGGATATGGAGATCAGAGGGGGATCTACTAGTGAATGGAGCATTCTTTGTGAGGTCAGGAGATCCAAGTAGAAGGAGGCCATTTCACAGGCTGGATATGATCTCCTACAAGCCCGGGTCTTTCGTCAGCCGACTAACCCGCTTTTCCGGAGCCCTCAATTGCTTCATCGGCCGGCCATGTTAG 1302 49.77 MAEFGVKVLVLLLLGVVANANIGNFDDYWKNRAEEAKLAALDAYDPNPEAVTDSFNAQVGKAIAGTNTTRRNLRKNKGPCRATNPIDRCWRCDPNWANNRKKLASCVLGFGRRTFGGKNGRYYVVTDSSDSDLLNPKPGTLRHAVIQNQPLWIIFARSMVIRLTQELMVNSHKTIDARGVNVHIAFGAGITVQFVKNVIIHGLHIHDIVAGTGGLIRDSVDHYGFRTKSDGDGISIFGASNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYSGDAIMQVTVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYATQETWKNWIWRSEGDLLVNGAFFVRSGDPSRRRPFHRLDMISYKPGSFVSRLTRFSGALNCFIGRPC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19581657 19583542 - Bpe011094.1 Bpe13g01430 114210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01430 433 Pfam Pectate lyase 168 349 IPR002022 -
Bpe13g01430 433 Pfam Pectate lyase, N terminus 21 73 IPR007524 GO:0030570
Bpe13g01430 433 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Bpe13g01430 433 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Bpe13g01430 433 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Bpe13g01430 433 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Bpe13g01430 433 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Bpe13g01430 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Bpe13g01430 433 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Bpe13g01430 433 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Bpe13g01430 433 Gene3D - 83 426 IPR012334 -
Bpe13g01430 433 SUPERFAMILY Pectin lyase-like 84 424 IPR011050 -
Bpe13g01430 433 SMART amb_all 158 355 IPR002022 -
Bpe13g01430 433 PANTHER PECTATE LYASE 14 433 - -
Bpe13g01430 433 PANTHER PECTATE LYASE 18-RELATED 14 433 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01430 Bpe-Chr13:19581657 Bpe14g00191 Bpe-Chr14:2222322 0 dispersed
Bpe13g00464 Bpe-Chr13:12165144 Bpe13g01430 Bpe-Chr13:19581657 0 wgd
Bpe13g01430 Bpe-Chr13:19581657 Bpe02g01467 Bpe-Chr2:17989441 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01430 K01728 - mnt:21385534 703.36