Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01442 ATGAGTGCTCTCTCCAGGCTCGCACCTCTGACTATCATTGAGCCGCTTTCTTCCTCCTCATCTACCTTCCTATCTCCTTCACCTTTTCTTCCCTTCTCTCTCACTCCAGTCCTAGGGTTTTGTTCCCCGAAATCTCTCACCACATCCTCCCCACTCCGACTTCAATTTCGCGTCGCTTTCGATTATCAGAGCTCCGCTTTCCCCGCCGAGCATCGACTTTCTGACGAGGAGGAAGACGACGACGACGACGACGACGTGGTTGCCGATGAATATGACGACATTCCTGGGGATGTATCGGACGGTATCGGACCGAGTGACGAGGAAATCGATTTGCCAATGGCAGCTGCGGAGGCATCGACTCGGTTCGAGGAATTTAAGTGGCAGAGAGTGGAAAGGATCCTGAAAGAAGTCAGAACATTTGGTGAAGAAATCATTGATGCCGATGAACTCGCTTCTATTTATGATTTCCGCATTGATAAATTTCAGCGGTTGGCCATTCAAGCATTCTTAGAAGGATCTTCGGTGGTTGTATCAGCGCCAACTAGTAGCGGCAAGACTTTGATTGCAGAAGCTGCGGCTGTGGCCACGGTAGCCCGGAAACGCCGATTATTCTACACGACCCCACTTAAAGCCTTGTCTAATCAGAAATTTCGCGAATTTCGGTATGAAACGTTTGGACATACCAATGTTGGGCTTCTTACAGGAGATTCTGCAATTAACAAGGACGCTCAGATTCTGATCATGACCACGGAAATCTTGCGTAACATGTTGTATCAGAGTGTAGGGATGATGTCTTCTGGGAGTGGATTATTCCATGTTGATGCGATTGTTTTAGATGAAGTTCATTATCTTAGTGATATTTCGCGTGGTACGGTGTGGGAAGAGATTGTTATTTATTGTCCCAAAGAAGTGCAACTTATATGTCTTTCAGCAACAGTTGCAAATCCAGATGAACTAGCTGGTTGGATAGGACAGATTCATGGCAAGACTGAGTTGGTAACTTCGTCAAAGCGTCCAGTTCCTCTATCATGGCACTTCTCTACAAGGAATTCTCTGTTACCTCTTCTTGATGAGAAAGGAACACGAATGAATAGGAAGCTGTCTCTCAACTATCTTCAACTCCATGCTTCAGGAGTTAAGCCCTACAAAGAAGATGGCTATAAAAGAAGGAATTCAAGAAAACGTGAAAGTCAGATGAGCTACGATGATATTAGTAGCATAACTGGACAACAGTCTCTTTCCAAACAAGACATAAACTCCATTCGACGATCACAAATTCCTCTGGTCACAGATACACTATGGCAACTTAAGGGCTGGGATATGCTTCCAGCAATTTGGTTCATATTTAGCCGGAAAGGTTGTGATGCAGCCACTCAATATCTGGAAGGTAGTAAACTCTTAGATGAATGTGAGACAAGTGAGGTTGAATTGGCCTTGAAGAAATTTCGCATGCAGTATCCTGATGCTGTCAGGGAGACAGCTATCAAAGGTCTTCTTCAAGGGGTTGCTGCACATCATGCTGGCTGTTTACCACTATGGAAGTCATTCATAGAAGAACTCTTTCAACGAGGACTTGTTAAGGTTGTCTTTGCGACTGAAACACTAGCTGCAGGAATTAACATGCCCGCTAGGACGGCAGTTATTTCATCCATAAGCAAAAGAAGTAATATAGGTCGCATCCAATTGAGTTCAAATGAACTACTTCAAATGGCAGGGCGTGCCGGCCGTAGAGGTATTGATGGAAGAGGTCATGTGGTGCTTGTTCAAACTCCTTCAGAAGGGGCCGAAGAAAGCTGCAAACTTTTATTTGCTGGTATGGAACCTCTTGTTTCACAGTTTACTGCATCCTACGGAATGGTGCTGAATCTTCTTTCAGGAGCAAAAGTTACGCGTAGATCAAATGACACAAATGATAAGAAAGCCTTCCTTGCTGGACGAACTTTAGATGAAGCTAGGAAGTTGGTGGAGAAAAGTTTTGGAAATTATGTTGGGAGCAACGTTATGCTTGCTGCAAAAGAAGAACTAACTAATATAAAGAAAGAGATTGAGATATTAACCTCAGAAATAACAGATGAAGCCATAGATAGAAAGAGCAGGAAGCTTATGTCAGTTGAATCATACAAGGAGATTGCAGAATTACAAGATGAATTAAGGTCACAGAAACAACTGAGGACAGAACTGCGAAGAAAGATGGAAACACACAGAATCTCAGCTCTGAGATCTTTACTAAAGGAGTGCCAAAATGGACAACTACCCTTTATTTGCTTGCAATACAAAGATTCTGAAGGGGTTGAACACTCAGTTCCTTCTTTGTTCCTCGGAAATGTGGGCTCATCAGAACTTAGAATTGTAGTTGCTACAATTGCATCATTTCCAGTAAATATGACCGAAGAAGAGCATATCGATAAAGATCATGCAATAGACGAGAATGTAGGCATCAAGCCATCATATTATGTGGCTTTAGGTTCAGATAATGCTTGGTACCTTTTCACTGAGAATTGGATTAGAGCTGTTTACAAAACCGGCCTTCAAAATGTCCCTTTAGCAAAAGGGGATGCAATGCCACGGGAAATTATGAGGAGGCTTCTTGATAAGGAGGAGAAAAAGTGGGAAAATCTTGCCGAGTCCGCACAGGGTAGTTTATGGTGCATGGAAGGATCTCTAGAGACATGGTCATGGAGTTTAAACGTACCAGTTTTGAATAGTCTCTCGGAAAATGATGAATTATTACAAGAATCTCCAGCATATCTCGAAGCATTAAACTGCTACAAGGAACAAAGAACTAAAGTTGCTCGTTTGAAGAAAAGAATAGCTCGGACAGAAGGCTTTAAAGAATATAAGAAGGTTATTGACATGACCAAGATGATCGAGGATAAGATACGACAACTGAAGGCTAGATCGAGCCGGCTGAGTAACCGAATAGAGCAAATTGAACCGTCTGGCTGGAAGGAGTTTTTGCATGTTAGTAATGTGATACATGAAATGCGGGCACTTGACATTAATACTCATGTAATATATCCTCTTGGAGAAACAGCAGCAGCCATTCGAGGAGAAAATGAACTCTGGCTGGCAATGGTTCTAAGAAGTAAACTTCTGTTAGATCTAAAACCTGCACAACTCGCGGGTTTAGTTGCAAGTTTAGTTTCTGAAGGGATCAAACTACGCCCCTGGAAAAACAATAATTACATATTTGAACCTTCCACGGCGGTGGTCAAGGTCATAAACATCTTGGAAAATCAAAGAAGCAGTCTCATGCGTATTCAAGAGAAGTATGGAGTTAACATAACAGTTTGCTTGGATTGTCAATTCTCAGGTATGATTGAGGCCTGGGCTTCTGGGTTAACTTGGAAGGAAATGATGATGGATTGCGCAATGGACGAGGGGGACCTAGCCCGTCTTTTGCGCAGGACGATAGATCTGCTTGCCCAGATTCCAAAATTGCCGGATATTGACCCGATACTTCAAAGCAATGCATCTACTGCTTCAAATGTCATGGACCGGCCTCCAATTAGCGAACTTGCTGGATGA 3528 43.08 MSALSRLAPLTIIEPLSSSSSTFLSPSPFLPFSLTPVLGFCSPKSLTTSSPLRLQFRVAFDYQSSAFPAEHRLSDEEEDDDDDDDVVADEYDDIPGDVSDGIGPSDEEIDLPMAAAEASTRFEEFKWQRVERILKEVRTFGEEIIDADELASIYDFRIDKFQRLAIQAFLEGSSVVVSAPTSSGKTLIAEAAAVATVARKRRLFYTTPLKALSNQKFREFRYETFGHTNVGLLTGDSAINKDAQILIMTTEILRNMLYQSVGMMSSGSGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLSWHFSTRNSLLPLLDEKGTRMNRKLSLNYLQLHASGVKPYKEDGYKRRNSRKRESQMSYDDISSITGQQSLSKQDINSIRRSQIPLVTDTLWQLKGWDMLPAIWFIFSRKGCDAATQYLEGSKLLDECETSEVELALKKFRMQYPDAVRETAIKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSISKRSNIGRIQLSSNELLQMAGRAGRRGIDGRGHVVLVQTPSEGAEESCKLLFAGMEPLVSQFTASYGMVLNLLSGAKVTRRSNDTNDKKAFLAGRTLDEARKLVEKSFGNYVGSNVMLAAKEELTNIKKEIEILTSEITDEAIDRKSRKLMSVESYKEIAELQDELRSQKQLRTELRRKMETHRISALRSLLKECQNGQLPFICLQYKDSEGVEHSVPSLFLGNVGSSELRIVVATIASFPVNMTEEEHIDKDHAIDENVGIKPSYYVALGSDNAWYLFTENWIRAVYKTGLQNVPLAKGDAMPREIMRRLLDKEEKKWENLAESAQGSLWCMEGSLETWSWSLNVPVLNSLSENDELLQESPAYLEALNCYKEQRTKVARLKKRIARTEGFKEYKKVIDMTKMIEDKIRQLKARSSRLSNRIEQIEPSGWKEFLHVSNVIHEMRALDINTHVIYPLGETAAAIRGENELWLAMVLRSKLLLDLKPAQLAGLVASLVSEGIKLRPWKNNNYIFEPSTAVVKVINILENQRSSLMRIQEKYGVNITVCLDCQFSGMIEAWASGLTWKEMMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDPILQSNASTASNVMDRPPISELAG 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19697402 19702638 - Bpe011106.1 Bpe13g01442 114222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01442 1175 MobiDBLite consensus disorder prediction 382 403 - -
Bpe13g01442 1175 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 55 1171 - -
Bpe13g01442 1175 Gene3D - 949 1167 - -
Bpe13g01442 1175 CDD SF2_C_Ski2 440 590 - -
Bpe13g01442 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 428 624 IPR001650 -
Bpe13g01442 1175 Coils Coil 668 688 - -
Bpe13g01442 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 166 331 IPR014001 -
Bpe13g01442 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 591 IPR027417 -
Bpe13g01442 1175 Gene3D - 118 338 IPR027417 -
Bpe13g01442 1175 SMART DSHCT_2 1000 1174 IPR012961 -
Bpe13g01442 1175 MobiDBLite consensus disorder prediction 382 400 - -
Bpe13g01442 1175 Gene3D - 339 609 IPR027417 -
Bpe13g01442 1175 SMART ultradead3 154 345 IPR014001 -
Bpe13g01442 1175 Coils Coil 710 730 - -
Bpe13g01442 1175 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 55 1171 - -
Bpe13g01442 1175 Pfam DSHCT (NUC185) domain 1004 1170 IPR012961 -
Bpe13g01442 1175 SMART helicmild6 492 578 IPR001650 -
Bpe13g01442 1175 Pfam DEAD/DEAH box helicase 161 314 IPR011545 GO:0003676|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01442 K26077 ISE2, EMB25; ATP-dependent RNA helicase ISE2 [EC:3.6.4.13] - jre:109008662 1680.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01083 Bpe-Chr13:16378403 Bpe13g01442 Bpe-Chr13:19697402 1.08E-71 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g801 . Blo16g01143 . Bda11g01247 Bpe13g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1006 Cone19ag1000 . . . . . . . . Bda07g01543 Bda11g01247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01726 Chy09g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012724 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28