Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01443 ATGGCGGCGTGGACACCCCGTTTTCTATTTCTGCAAATTCTCCTCGTAGTCTCTCTTCTCGTCATCCCTACCCGATCCGACCCGGACCCGCTCCAGGATTACTGCGTAGCAGACCAGAGACCTTCGACCTTCTTCATCAATGGAATCCCTTGTTTAAACCCAGCCCTAGCGGCTTCATCCCATTTCACCACTTCTGCGTTATCCAAACCAGGAAATACACGGACGAATATCTTCGGCTTCAACGTTACCCTAACTGACCCTGCAAACCTACCCGGCCTCAACACGCAGGGTTTGACGATGGCTCGAACCGACCTAGCTGGGCTCGGGGTGGTGCCTCTCCACTCGCACCCACGAGCCTCGGAAGTGACCATTTGCATAAAGGGGGAGCTTTTCGTGGGCTTCATCGACACGTCGAATCGGCTGTTCACGCAGCGGCTGAGGGTCGGAGAGTCATTCGTGTTTCCCAAAGGTTTGATTCATTTTCTGTACAACGAAAGCCCCAAAGCCTCGGCTGCCGCCGTGTCCGGTTTCAACAGCCAGAGCCCCGGCGCTCAGCTGGCTTCGCTCGCTGCTTTCACGTCCAGGCCTATGATCCCTGACGAGGTTTTGAAGAAGGCGTTCCAGATTAATGGGCAAGATATCTCTCGGATCCGTAGGAATCTGGGAGGCTGA 672 55.06 MAAWTPRFLFLQILLVVSLLVIPTRSDPDPLQDYCVADQRPSTFFINGIPCLNPALAASSHFTTSALSKPGNTRTNIFGFNVTLTDPANLPGLNTQGLTMARTDLAGLGVVPLHSHPRASEVTICIKGELFVGFIDTSNRLFTQRLRVGESFVFPKGLIHFLYNESPKASAAAVSGFNSQSPGAQLASLAAFTSRPMIPDEVLKKAFQINGQDISRIRRNLGG 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19703332 19704003 - Bpe011107.1 Bpe13g01443 114223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01443 223 CDD cupin_OxOx 27 221 - -
Bpe13g01443 223 Gene3D Jelly Rolls 26 223 IPR014710 -
Bpe13g01443 223 SMART Cupin_1_3 65 215 IPR006045 -
Bpe13g01443 223 Pfam Cupin 67 213 IPR006045 -
Bpe13g01443 223 PRINTS Germin signature 144 164 IPR001929 GO:0030145
Bpe13g01443 223 PRINTS Germin signature 178 193 IPR001929 GO:0030145
Bpe13g01443 223 PRINTS Germin signature 114 134 IPR001929 GO:0030145
Bpe13g01443 223 SUPERFAMILY RmlC-like cupins 27 220 IPR011051 -
Bpe13g01443 223 ProSitePatterns Germin family signature. 109 122 IPR019780 GO:0030145
Bpe13g01443 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 222 - -
Bpe13g01443 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 13 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01443 - - - han:110895019 303.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01443 Bpe-Chr13:19703332 Bpe08g00436 Bpe-Chr8:2719666 1.38E-47 dispersed
Bpe13g01443 Bpe-Chr13:19703332 Bpe08g00435 Bpe-Chr8:2716193 2.54E-48 transposed
Bpe13g01443 Bpe-Chr13:19703332 Bpe05g00174 Bpe-Chr5:5835721 2.78E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g797 . Blo16g01144 . . Bpe13g01443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012955 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28