Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01454 ATGTTAATATGCACCCGAATTAAAGGCGCCCTTTCTCTGCTTTTTCTCCGTCATTCAGCCTCAGCCTCCGCCTTCATTTCTACTCCGCCGCCGTCTAGATCATCTCTCCGCTATTTCTGCTCGTCTTTTTTGCCCTCAGAGGTTACCATGGTGGCGGAGCATTTAAAAGATGAGGACTACCTCAAAATTATAATTCCCAAGCGCATCCAGCTATTTGAGTCCATCAAAGCTCAGCAGCTAGCTCATCGTCAATCTCTCCCGTCGGATCCCATCAAGATTACCTTGCCGGACGGAACAGTGAAGGAAGGTAAAAAGTGGCAAACATCTCCCTTTGACATTGCGAAGGAACTTTCAAAAAGTTTGGCTACAAACGCTTTGATTTCTCAAGTGGACGGAGTTTTATGGGACATAAGTAGACCCCTTGAGAGTGACTGTGAGATTAAGATTTTCACTTTTAGTAGCGATGAAGGGCGTGATACGTTTTGGCATTCTAGTGCTCATATACTCGGACAGTCACTAGAGATGGAATACGGTTGCAAGCTTTGCATTGGACCTTGCACCACTCGAGGAGAGGGCTTCTATTATGATGCATTTTATGGTGATTTAGGCTTGAACGAAGACCATTTCAAAAAAATTGAAGCGGGGGCACTAAAGGCTGTTGCGGAGAAACAGCCATTCGAGCGTATTGAAGTGTCAAGGCAACAGGCACTTGAGATGTTTTCTGACAATACTTTTAAGGTTGAAATTATCAAAGATTTGCCCGAAGACAAGACTATTACAGTATATAGATGTGGCCCTCTAGTTGATTTATGTCGCGGCCCCCACATTCCAAATACATCCTTTGTGAAGGCGATTGCATGTCTGAAGGCTTCATCAGCCTATTGGAGAGGAAACAAAGATCGCGAAAGCTTACAAAGGGTTTATGGTATCTCTTATCCCGATCAAAAAAGTTTGAAGGAATATATAAATTTGCTGGAAGAAGCCAAGAAGTATGACCATCGTTTGTTGGGTACAAAACAAGATCTTTTCTTTTGCCATCCGCTTAGTCCAGGAAGTTGGTTCTTCCTCCCTCATGGGGCTCGAATCTACAACAAACTAATGGAGTTTATACGGACACAATATAGGGAGAGAGGTTATGAAGAGGTTTTATCACCAAATATGTACAATATGCAACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAGGAGAATATGTTTGTGTTTGAGATTGAAAAGCAAGAATTTGGATTGAAACCAATGAATTGTCCTGGGCACTGTTTGATGTTCCAACACAGAGTTCGCTCATATAGGGAACTTCCCCTTCGATTGGCTGATTTTGGAGTTTTGCACCGCAACGAGGCCAGTGGTGCTCTGACTGGGCTAACTCGTGTGAGGAGGTTTCAACAGGATGATGCTCACATCTTCTGCTCTAAGTCTCAGATAAAAGATGAAGTGAGAGGCGTCTTAGAATTCATCAAATATATCTACAACATTTTTGGGTTCACCTTTGATCTGAAGCTGTCAACGAGGCCTGAAAAATACCTTGGAGACATAGCTACATGGGAGGAAGCTGAAGCAGCTCTTACAGAAGCATTAAATGAATTTGGTAAACCCTGGCAGCTAAATGAAGGTGATGGTGCATTTTACGGGCCAAAGATAGACATTAGTGTTTCTGACGCATTGAAGAGGAAATTTCAATGTGCGACACTTCAGTTGGACTTCCAACTTCCCAAGCGTTTTGAATTATATTACTCTACAGAGGATGAAGCCAAGAGAGAGATGCCTGTGATGATACATAGAGCCATTTTGGGGTCTGTTGAGCGAATGTTTGCTATTTTGTTGGAGCATTATAAGGGGAAATGGCCTTTTTGGCTTAGTCCACGTCAAGCCATTGTTTGCCCCGTGTCGGAGAAATCCCAATCTTATGCACTTACGGTGCGTGATCAAATTCATCATGCTGGTTATTACGTCGATGCTGATATAACTGATCGGAAGATCCAAAAAAAGGTACGAGAAGCCCAGTTGGCGCAGTACAACTTTATCTTGGTTGTTGGTGAGGAGGAGGCCAACACTGGGCAGGTGAGTGTTCGAGTCAGAGATAAAGCCGATCACAGAGTGATGAGCATCGAGGACTTACTCAAACACTTCGGAGAAGAGAATGCAGCTTTTCATTAG 2178 43.34 MLICTRIKGALSLLFLRHSASASAFISTPPPSRSSLRYFCSSFLPSEVTMVAEHLKDEDYLKIIIPKRIQLFESIKAQQLAHRQSLPSDPIKITLPDGTVKEGKKWQTSPFDIAKELSKSLATNALISQVDGVLWDISRPLESDCEIKIFTFSSDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNEDHFKKIEAGALKAVAEKQPFERIEVSRQQALEMFSDNTFKVEIIKDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGNKDRESLQRVYGISYPDQKSLKEYINLLEEAKKYDHRLLGTKQDLFFCHPLSPGSWFFLPHGARIYNKLMEFIRTQYRERGYEEVLSPNMYNMQLWETSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCSKSQIKDEVRGVLEFIKYIYNIFGFTFDLKLSTRPEKYLGDIATWEEAEAALTEALNEFGKPWQLNEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPKRFELYYSTEDEAKREMPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALTVRDQIHHAGYYVDADITDRKIQKKVREAQLAQYNFILVVGEEEANTGQVSVRVRDKADHRVMSIEDLLKHFGEENAAFH 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19816855 19822397 - Bpe011118.1 Bpe13g01454 114234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01454 725 Gene3D Bira Bifunctional Protein; Domain 2 314 621 IPR045864 -
Bpe13g01454 725 Gene3D - 154 312 - -
Bpe13g01454 725 CDD TGS_ThrRS 91 156 - -
Bpe13g01454 725 Hamap Threonine--tRNA ligase [thrS]. 156 723 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bpe13g01454 725 SUPERFAMILY Class II aaRS and biotin synthetases 332 615 IPR045864 -
Bpe13g01454 725 CDD ThrRS_anticodon 628 717 - -
Bpe13g01454 725 Pfam TGS domain 91 151 IPR004095 -
Bpe13g01454 725 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 409 618 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bpe13g01454 725 SUPERFAMILY ThrRS/AlaRS common domain 153 330 IPR018163 GO:0000166
Bpe13g01454 725 SUPERFAMILY Class II aaRS ABD-related 616 719 - -
Bpe13g01454 725 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 320 623 IPR006195 -
Bpe13g01454 725 TIGRFAM thrS: threonine--tRNA ligase 162 717 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bpe13g01454 725 SUPERFAMILY TGS-like 91 152 IPR012676 -
Bpe13g01454 725 CDD ThrRS_core 332 628 IPR033728 -
Bpe13g01454 725 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 53 724 - -
Bpe13g01454 725 SMART tRNA_SAD_4 259 308 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bpe13g01454 725 ProSiteProfiles TGS domain profile. 89 151 IPR004095 -
Bpe13g01454 725 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 259 308 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bpe13g01454 725 Gene3D - 89 151 IPR012675 -
Bpe13g01454 725 PRINTS Threonyl-tRNA synthetase signature 552 580 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bpe13g01454 725 PRINTS Threonyl-tRNA synthetase signature 596 609 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bpe13g01454 725 PRINTS Threonyl-tRNA synthetase signature 418 446 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bpe13g01454 725 PRINTS Threonyl-tRNA synthetase signature 451 474 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bpe13g01454 725 PRINTS Threonyl-tRNA synthetase signature 623 635 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bpe13g01454 725 PANTHER THREONINE-TRNA LIGASE 53 724 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bpe13g01454 725 Pfam Anticodon binding domain 630 717 IPR004154 -
Bpe13g01454 725 Gene3D - 622 724 IPR036621 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01454 K01868 TARS, thrS; threonyl-tRNA synthetase [EC:6.1.1.3] - csv:101212232 1256.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00186 Bpe-Chr12:1425044 Bpe13g01454 Bpe-Chr13:19816855 1.02E-125 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g751 Blo01g00402 Blo16g01152 Bda01g02229 Bda11g01256 Bpe13g01454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01256 . . Bma01g00058 Bma06g00627 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003702 2 1 2 2 1 1 3 1 1 0 1 1 3 0 1 3 1 1 2 1 1 1 2 2 2 1 1 3 3 2 46