Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01460 ATGCGGTACTGGAGCAAAAAGATTCCAAACAATATTCCCAAATCCAGTTTTCTCCTGTCGAAGGCGTCTCCTCTCAGCGCGGTGGATTCGGCGGCTTTCACGAAACTTGCTGCTGAAAACGCACTCTCCACCCGCCTGCCGGAGTTTTGCTCGGCCGCAAAACTGCTCTGTTTTCCTGATTTGTCCCCGAGCTTGGAGAGGCACTCCAAGGATGCGAACTTCGCTGTTTATTCCAACCGAAACTTTACCAACTACGGCAGAGAACGAGTGGATGGAACCGATTCTTTTCGGACATACTCAGCTGATGAAAATCTTCCGGTAGGTAGTTTCCGACAGTACAGCCGCGACTCATCGAACCACAATGATAAGTTTACGAACTACGTCCAAGGAGGCAACGTGGTTGACCAGAGTTTCCACACTTACGGCACCGGAGCCAATGGAGGCGCCGGAAAGTTCACCACATACGCGAACGATGTCAATGTGGCGAACCTCGGATTTAAGTCCTACTCCAGCGGTACAAACGGGAGGACTCAAACTTTCACGAGCTATAGCGATGATGGTAATACCGGGGACCAGTTCTTCGCAAACTACGGCAAGGAGGGCAATGGGGCTCTGAACGAGTTCACCAGCTACGGGAACAATAGCAACGTCATCGGCTCTACTTTTTCCAGCTATGGTAAAGGCGGAAACTCTGTAAATGATACATTCACTAATTACGGAAACAATCAGAATGTTCCTGAGAATACCTTCAACAATTACGGAAGAGATGGCAATGCAGCCGCGGAGAACTTCGCTAATTACCGAGATCAAGCAAATGTAGGGGATGATTCATTCAAGTCCTACGCGAAGAACTCTAATGGCGCAGAAGTCGATTTCACCAATTACGGAAATTCTAGCAACGAAGGTACTGATAAATTCAGTGGGTATGGTAAGGACGCAAATGACCCGACAGTAAATTTCAAGATCTACGGGATTAACAACACGTTCAAGGATTACGCTAAAAGTGGCGTCACTTTCTCTGGGCTCCCCAACACAAGCTCAAAAGCTTCAGAGATTATGGCGGACAGTGGCAGTCTGGTAAAAAGATGGGTGGAGCCGGGCAAATTCTTTCGGGAGTCGATGTTGAATGAGGGAACTGTGATGCCCATGCCGGATATTAGAGATAAAATGCCGAAAAGGTCATTTTTGCCTCGAAGCATTTTGTCAAAATTACCATTTTCGAGCTCCAAAGTCTCGGAGCTGAAGAAAACTTTCCACGCCGGCGACAACTCGGCGATGGAGAGGATGATAACGGCGGCGTTGGAGGAATGCGAGAGAAAACCAAGCGTGGGAGAGACGAAACGATGCGTCGGATCAGTGGAAGACATGATCGATTTCGCCACTTCCGTTCTCGGCCAAAACGTCGTCGTTCGAACGACGGAGAACGTCAAAGGGTCAAACCAACGAATCATGGTAGGATCAATCAACAGAATCAACGGTGGAAAAATCACACAGTCTGTTTCTTGCCATCAGAGTCTGTACCCTTACCTACTCTATTACTGCCACTCAGTCCCAAAGGTCCGGCTCTACGAAGCGGATCTACTTGACCCGACCACAAAGGCCAAGATAAACCATGGAGTGGCGATATGCCACGTGGACACATCTGCTTGGAGCGTAACCCACGGGGCTTTCATGGCTTTGGGTTCGGGTCCGGGTCGGATTGAGGTTTGCCATTGGATTTTCGAAAACGACATGACTTGGACAATCGCGGATTGA 1755 48.95 MRYWSKKIPNNIPKSSFLLSKASPLSAVDSAAFTKLAAENALSTRLPEFCSAAKLLCFPDLSPSLERHSKDANFAVYSNRNFTNYGRERVDGTDSFRTYSADENLPVGSFRQYSRDSSNHNDKFTNYVQGGNVVDQSFHTYGTGANGGAGKFTTYANDVNVANLGFKSYSSGTNGRTQTFTSYSDDGNTGDQFFANYGKEGNGALNEFTSYGNNSNVIGSTFSSYGKGGNSVNDTFTNYGNNQNVPENTFNNYGRDGNAAAENFANYRDQANVGDDSFKSYAKNSNGAEVDFTNYGNSSNEGTDKFSGYGKDANDPTVNFKIYGINNTFKDYAKSGVTFSGLPNTSSKASEIMADSGSLVKRWVEPGKFFRESMLNEGTVMPMPDIRDKMPKRSFLPRSILSKLPFSSSKVSELKKTFHAGDNSAMERMITAALEECERKPSVGETKRCVGSVEDMIDFATSVLGQNVVVRTTENVKGSNQRIMVGSINRINGGKITQSVSCHQSLYPYLLYYCHSVPKVRLYEADLLDPTTKAKINHGVAICHVDTSAWSVTHGAFMALGSGPGRIEVCHWIFENDMTWTIAD 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19877726 19879480 - Bpe011125.1 Bpe13g01460 114240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01460 584 Pfam BURP domain 369 581 IPR004873 -
Bpe13g01460 584 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 1 584 - -
Bpe13g01460 584 ProSiteProfiles BURP domain profile. 369 583 IPR004873 -
Bpe13g01460 584 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 1 584 - -
Bpe13g01460 584 SMART BURP_2 367 583 IPR004873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01460 - - - sind:105168257 868.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00076 Bpe-Chr12:529800 Bpe13g01460 Bpe-Chr13:19877726 1.01E-21 dispersed
Bpe13g01460 Bpe-Chr13:19877726 Bpe07g00832 Bpe-Chr7:14543304 8.82E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g717 . Blo16g01157 . Bda11g01263 Bpe13g01460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01263 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005778 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 3 38