Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01476 ATCATGGACAACTTTTACGGCCTGCAATCAGGCGGGGAGTTCTCGGAGAAGGCGATGATTTCGCCTGAAAACCGTATCCTACCTGTAAACTACCAGAACTTGTTCTCATACGGAGCCTTCCGCGATCGTTTTCCGATATTTGGATCCGATGAATTGCTCTCAGCCGCTTCCGTCGTTTCTGAAGCTGAAGCTGCTTTTGTTACGCCAGAAATTCAACGGGAAGAAGACATGGTCAGCATGATAAAGGCCAAAATTGCCTCTCATCCCTGCTATCCTCGTTTGCTCGACACGTATATTGACTGCCAGAAGGTAGGGGCGCCGCCGGAGATTGCGTCTTTGTTGGAAGAAATCCGAGTAGAAAACGACTTTTATAAAAGAGACACAGTTTCAATGGGTTTCGGAGCTGATCCCGAGCTTGACAATTTCATGGTAACGTACTGTGACATCTTGGCCAAATATAAATCAGATCTTGCAAGGCCTTTCGATGAAGCAACAACGTTCTTGAACAAGATTCAGTCACGGCTTTGTAGTCTCTCCACCGGCGCCTCCGAGAGAAGCCCTTCCGGGGATGTCGCAGAATCTTCGGACGATGATAATGGCAGAAGAGAGCAGGGAGAGGAGCAAGAGGGTTTAAGGAGGGGAGAGGGAAATCATCTGAAAGACGTGCTGTTCCGCAAGTTTGGCAGACAGATCGGAAGCTTAAAAGTGGAATTCTCAAAGACGAAGAAAAAGGGAAAATTACCAAAAGAAGCTCGTCAAACACTGCTCGAATGGTGGAATGTTCACAACAAATGGCCATATCCCACTGAAGGCGATAAGATAGCACTGGCGGAGGCGACGAGGCTGGACCAGAAGCAAATCAATAACTGGTTCGTTAATCAACGGAAGCGCCACTGGAAGGCTTCTGAGAATATGCAGTTTGCTTTGTTGGATAATATGCCTCCGCCATTCTTTGGAGATTGA 963 47.56 IMDNFYGLQSGGEFSEKAMISPENRILPVNYQNLFSYGAFRDRFPIFGSDELLSAASVVSEAEAAFVTPEIQREEDMVSMIKAKIASHPCYPRLLDTYIDCQKVGAPPEIASLLEEIRVENDFYKRDTVSMGFGADPELDNFMVTYCDILAKYKSDLARPFDEATTFLNKIQSRLCSLSTGASERSPSGDVAESSDDDNGRREQGEEQEGLRRGEGNHLKDVLFRKFGRQIGSLKVEFSKTKKKGKLPKEARQTLLEWWNVHNKWPYPTEGDKIALAEATRLDQKQINNWFVNQRKRHWKASENMQFALLDNMPPPFFGD 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20040897 20047453 + Bpe011142.1 Bpe13g01476 114256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01476 320 MobiDBLite consensus disorder prediction 190 214 - -
Bpe13g01476 320 MobiDBLite consensus disorder prediction 179 214 - -
Bpe13g01476 320 ProSiteProfiles 'Homeobox' domain profile. 238 301 IPR001356 GO:0003677
Bpe13g01476 320 SUPERFAMILY Homeodomain-like 240 315 IPR009057 -
Bpe13g01476 320 Pfam KNOX1 domain 81 121 IPR005540 GO:0003677|GO:0005634
Bpe13g01476 320 SMART KNOX2_2 129 180 IPR005541 GO:0003677|GO:0005634
Bpe13g01476 320 SMART HOX_1 240 305 IPR001356 GO:0003677
Bpe13g01476 320 ProSitePatterns 'Homeobox' domain signature. 276 299 IPR017970 GO:0000981|GO:0006355
Bpe13g01476 320 CDD homeodomain 250 300 IPR001356 GO:0003677
Bpe13g01476 320 Pfam KNOX2 domain 134 178 IPR005541 GO:0003677|GO:0005634
Bpe13g01476 320 SMART ELK_2 218 239 IPR005539 GO:0003677
Bpe13g01476 320 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 2 311 - -
Bpe13g01476 320 Pfam Homeobox KN domain 258 297 IPR008422 GO:0003677|GO:0006355
Bpe13g01476 320 Gene3D - 236 308 - -
Bpe13g01476 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 311 - -
Bpe13g01476 320 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00659 Bpe-Chr12:12206010 Bpe13g01476 Bpe-Chr13:20040897 6.56E-102 dispersed
Bpe13g01476 Bpe-Chr13:20040897 Bpe04g00068 Bpe-Chr4:541394 9.57E-28 dispersed
Bpe11g01776 Bpe-Chr11:14122221 Bpe13g01476 Bpe-Chr13:20040897 2.01E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22396 PF03791 KNOX2 8.30E-21 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01476 - - vri:117903949 411.764