Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe13g01476 | ATCATGGACAACTTTTACGGCCTGCAATCAGGCGGGGAGTTCTCGGAGAAGGCGATGATTTCGCCTGAAAACCGTATCCTACCTGTAAACTACCAGAACTTGTTCTCATACGGAGCCTTCCGCGATCGTTTTCCGATATTTGGATCCGATGAATTGCTCTCAGCCGCTTCCGTCGTTTCTGAAGCTGAAGCTGCTTTTGTTACGCCAGAAATTCAACGGGAAGAAGACATGGTCAGCATGATAAAGGCCAAAATTGCCTCTCATCCCTGCTATCCTCGTTTGCTCGACACGTATATTGACTGCCAGAAGGTAGGGGCGCCGCCGGAGATTGCGTCTTTGTTGGAAGAAATCCGAGTAGAAAACGACTTTTATAAAAGAGACACAGTTTCAATGGGTTTCGGAGCTGATCCCGAGCTTGACAATTTCATGGTAACGTACTGTGACATCTTGGCCAAATATAAATCAGATCTTGCAAGGCCTTTCGATGAAGCAACAACGTTCTTGAACAAGATTCAGTCACGGCTTTGTAGTCTCTCCACCGGCGCCTCCGAGAGAAGCCCTTCCGGGGATGTCGCAGAATCTTCGGACGATGATAATGGCAGAAGAGAGCAGGGAGAGGAGCAAGAGGGTTTAAGGAGGGGAGAGGGAAATCATCTGAAAGACGTGCTGTTCCGCAAGTTTGGCAGACAGATCGGAAGCTTAAAAGTGGAATTCTCAAAGACGAAGAAAAAGGGAAAATTACCAAAAGAAGCTCGTCAAACACTGCTCGAATGGTGGAATGTTCACAACAAATGGCCATATCCCACTGAAGGCGATAAGATAGCACTGGCGGAGGCGACGAGGCTGGACCAGAAGCAAATCAATAACTGGTTCGTTAATCAACGGAAGCGCCACTGGAAGGCTTCTGAGAATATGCAGTTTGCTTTGTTGGATAATATGCCTCCGCCATTCTTTGGAGATTGA | 963 | 47.56 | IMDNFYGLQSGGEFSEKAMISPENRILPVNYQNLFSYGAFRDRFPIFGSDELLSAASVVSEAEAAFVTPEIQREEDMVSMIKAKIASHPCYPRLLDTYIDCQKVGAPPEIASLLEEIRVENDFYKRDTVSMGFGADPELDNFMVTYCDILAKYKSDLARPFDEATTFLNKIQSRLCSLSTGASERSPSGDVAESSDDDNGRREQGEEQEGLRRGEGNHLKDVLFRKFGRQIGSLKVEFSKTKKKGKLPKEARQTLLEWWNVHNKWPYPTEGDKIALAEATRLDQKQINNWFVNQRKRHWKASENMQFALLDNMPPPFFGD | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 20040897 | 20047453 | + | Bpe011142.1 | Bpe13g01476 | 114256 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe13g01476 | 320 | MobiDBLite | consensus disorder prediction | 190 | 214 | - | - | |
Bpe13g01476 | 320 | MobiDBLite | consensus disorder prediction | 179 | 214 | - | - | |
Bpe13g01476 | 320 | ProSiteProfiles | 'Homeobox' domain profile. | 238 | 301 | IPR001356 | GO:0003677 | |
Bpe13g01476 | 320 | SUPERFAMILY | Homeodomain-like | 240 | 315 | IPR009057 | - | |
Bpe13g01476 | 320 | Pfam | KNOX1 domain | 81 | 121 | IPR005540 | GO:0003677|GO:0005634 | |
Bpe13g01476 | 320 | SMART | KNOX2_2 | 129 | 180 | IPR005541 | GO:0003677|GO:0005634 | |
Bpe13g01476 | 320 | SMART | HOX_1 | 240 | 305 | IPR001356 | GO:0003677 | |
Bpe13g01476 | 320 | ProSitePatterns | 'Homeobox' domain signature. | 276 | 299 | IPR017970 | GO:0000981|GO:0006355 | |
Bpe13g01476 | 320 | CDD | homeodomain | 250 | 300 | IPR001356 | GO:0003677 | |
Bpe13g01476 | 320 | Pfam | KNOX2 domain | 134 | 178 | IPR005541 | GO:0003677|GO:0005634 | |
Bpe13g01476 | 320 | SMART | ELK_2 | 218 | 239 | IPR005539 | GO:0003677 | |
Bpe13g01476 | 320 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 | 2 | 311 | - | - | |
Bpe13g01476 | 320 | Pfam | Homeobox KN domain | 258 | 297 | IPR008422 | GO:0003677|GO:0006355 | |
Bpe13g01476 | 320 | Gene3D | - | 236 | 308 | - | - | |
Bpe13g01476 | 320 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 311 | - | - | |
Bpe13g01476 | 320 | SMART | KNOX1_2 | 79 | 123 | IPR005540 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe12g00659 | Bpe-Chr12:12206010 | Bpe13g01476 | Bpe-Chr13:20040897 | 6.56E-102 | dispersed | |
Bpe13g01476 | Bpe-Chr13:20040897 | Bpe04g00068 | Bpe-Chr4:541394 | 9.57E-28 | dispersed | |
Bpe11g01776 | Bpe-Chr11:14122221 | Bpe13g01476 | Bpe-Chr13:20040897 | 2.01E-137 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22396 | PF03791 | KNOX2 | 8.30E-21 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe13g01476 | - | - | vri:117903949 | 411.764 |