Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01491 ATGGATTTTCAAGGAAGCAAACTTGTGTCCTCGCTCTCCTTTCCGTCAATGGAAGACGATATGATAAACTCTCTCCTCCTCAGCCACGATCCAGTCGGCCGTCATTTTGATTCCATGACACTGCTTTGTGCGACGAAGAACATAATTTTTCATGCTAGTGCATTACAAGAAAATCACTACTTTGGCGATGCTCATAATGCCGGGAAAATCGAAATGATTGAATCAGAAGAGCCGATTGCATGCACCATCTACAAGATATTAAGCCAGATGTCTAGAAATGGTGTAGGAGAAGATCTACACAAGAAAACAATGTTCTTGTTTGATTTGCTAGGAGACTACAGATGGGAAGAAAAAGTGGTTTTAGCCCTCACAGCATTTGCAGTGAGCTATGGAGAATTTCAGCTGCTAATACGACTAAGTCTCAGTAACCCATTTGCAACATCAATCACAATGCTCAAGCAGATGCCAAGAGATATAACTAAGTTTAAGCTTCAATTCAAGACTTTGACCATGGTGGTTAAATCTATGATGGATTTAGCAGAGTGTATCATCAAGTTTGAAGGCCTGCCATTTTCACAAGTAGAATTGGATTATGATATGAAATCCACTGCAAAAACTCATACCTATATAGCTGCTTACTGGGTTATGAGAAGCTGTCTGATATGCTATTCTCAGATCAAAGCTTTGCTGGGCGTAAAACCTGAGAAAGTGAGTTATAATTTGACAGCAATTGCATCGTGGGAGCTCTCGAGTCTGGTAATTCGCCTTAGTAGAATATGCAAACAGCTAAGCCAACAAGTTGAAATCTGTGATCGGATGATGGAAATAAAATTGCATCGGAAGTTGATAAATCTTTTCGAGGAAACACAAGCCAATGGCAATCAAGAGGTTCTTCGAATGTTGTTTGGTTTGAACGAGGAGTTTCCGCTCCAAAAACACTCTTCGGAAGAAAAGGTGGGGATTTTGGAGCTGATAAACAAGGTGGTAATACTATTAATCTCAAAGCCAGACCTCCTTCCCAAAGAAAGAACACTCTTCATTGTTCAACAAACAACTGATCATCCTCACAGAGAAAGTTCAGATGGAAGTTTTGAAGTCATATGGGTTTCTATTTCACTTTCTGATTCTTGGACTGATGCTGAAAAGATTCATACTCAACTTCTTTCCAAATCTTTTCCTTTCTACTCAATTCGGCAGCCATGGCTACTCAATGCCGCTACCGTTAAGTCCATAAAAGAAAAGTGGAAATTCGCAGACGAGCCGGTTATGGCTGTGTTGGATTCAAACGGGAGAGTCTCAAACTGGAATGCATTTGATATGATGTCTATTTGGGGAGGCGGGGCATATCCCTTCTCTGTTTTAAGAGAAAAAGAGCTATGGCTAGAGCAGAACTGGACACTCCAACTTTTGATAAATGGCATTGACCCTCTACTTACCAAGTGGGTCGAAGAAGGTAGAATTGTTTGCATTTATGGAAGCTGCAGTCTGAAGTGGATTCGAGAATTCACCGACAGAATGAAAGAAATGGAGAAGGAAGGTGTGCAGATTGAGATTGTATATGTTGGTGGGAGGAATCCAGTCCAAGATTTGAGGACCATTTTAGGCGTTGTTGATGCAGAAAAGATGAGCAGATCATTATCATTCACGAAAATATGCTTTTTCTGGATTAGATTGGAAAGCATAAGAAGATCAAAGCTCAGGCTAAACAATCCAAATGATCATATTCTTGAAAAGGTGTCGGAAATGCTGAATATCAGCAAAGAAACTGAGGACGGCTGGGCAGTGATAGGATCAGGCTCTTGCTCAGATATACTGAAGCTTCAAGGATCAAAGCAGATAGAATGCTTGAATTTGTTTCCCAAGTGGAAAGAAAATGTGGGAAAGTTTGGATTTTTAGGTGCCCTTAGGACTGCCATTAATCCTCCTCTTCTTTCAGGGCCCTGTGGCCACTCAAAGCTTGTTCCATATCGTGAAGACGAGGAAAGGTGTGTAGTTTGTGACAAGTGTAATCGAATCATGACAAAATTTATCGTCTACGAATGA 2043 40.72 MDFQGSKLVSSLSFPSMEDDMINSLLLSHDPVGRHFDSMTLLCATKNIIFHASALQENHYFGDAHNAGKIEMIESEEPIACTIYKILSQMSRNGVGEDLHKKTMFLFDLLGDYRWEEKVVLALTAFAVSYGEFQLLIRLSLSNPFATSITMLKQMPRDITKFKLQFKTLTMVVKSMMDLAECIIKFEGLPFSQVELDYDMKSTAKTHTYIAAYWVMRSCLICYSQIKALLGVKPEKVSYNLTAIASWELSSLVIRLSRICKQLSQQVEICDRMMEIKLHRKLINLFEETQANGNQEVLRMLFGLNEEFPLQKHSSEEKVGILELINKVVILLISKPDLLPKERTLFIVQQTTDHPHRESSDGSFEVIWVSISLSDSWTDAEKIHTQLLSKSFPFYSIRQPWLLNAATVKSIKEKWKFADEPVMAVLDSNGRVSNWNAFDMMSIWGGGAYPFSVLREKELWLEQNWTLQLLINGIDPLLTKWVEEGRIVCIYGSCSLKWIREFTDRMKEMEKEGVQIEIVYVGGRNPVQDLRTILGVVDAEKMSRSLSFTKICFFWIRLESIRRSKLRLNNPNDHILEKVSEMLNISKETEDGWAVIGSGSCSDILKLQGSKQIECLNLFPKWKENVGKFGFLGALRTAINPPLLSGPCGHSKLVPYREDEERCVVCDKCNRIMTKFIVYE 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20284658 20287183 + Bpe011158.2 Bpe13g01491 114271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01491 680 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION C 9 680 - -
Bpe13g01491 680 Pfam Sieve element occlusion C-terminus 455 680 IPR027944 -
Bpe13g01491 680 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 9 680 IPR039299 GO:0010088
Bpe13g01491 680 Pfam Sieve element occlusion N-terminus 18 289 IPR027942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01491 - - - rcu:8285466 659.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01491 Bpe-Chr13:20284658 Bpe14g00231 Bpe-Chr14:2478614 5.32E-105 dispersed
Bpe13g01491 Bpe-Chr13:20284658 Bpe13g01492 Bpe-Chr13:20288944 1.00E-22 tandem
Bpe13g01491 Bpe-Chr13:20284658 Bpe02g01511 Bpe-Chr2:18326371 6.52E-101 wgd
Bpe13g01491 Bpe-Chr13:20284658 Bpe09g00525 Bpe-Chr9:14028057 2.27E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g604 . . . Bda11g01297 Bpe13g01491 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018063 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 5