Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01493 ATGCCTTTCTTCAAAATTTTGTTTGGGCACTGCACAGTGCCGATGGATCGACCACCTGTTTTACACCCAATTGCTGCTCATTTAGCAACTTCTGTGCTGCCGTTTCAATGTAGTCAACGGCATTGCTATGGAGAGTCAGTTCCCGGGGAATTTCGTTTGGCTGCATATCCCTCCATTCTCCTGCATATCCTTTCTTCTTGTAATTTGAACTCATGTGATCTTGCAATATTAGAGGCAACATGTTCCTTCTTCAAGCAGCCTGCAAATCTCCACCCTGATTTCCAGCTATCCATTTCAGAGCTTGCTGCTTTCGATATGTGCAGGAAGAGAGCTATATTTAAGCAGATGACAATGGAAGAGCAAAAGCATTTGAAGCAAAGATGTGGAGGTTCATGGAAACTGGTATTAAGGTTCCTGTTGGCTGGAGAAGCATGTTGCCGGAGGGAGACATCTCAGGCCGTAGCCGGACCAGGTCATAGTATAGCCGTTTCTTCAAAAGGCATCGCTTATACTTTCGGGTCTAACAACTTAGGACAGCTAGGACACGGCACCATCGAAGAAGAATGGCGACCTCGACCAATCAGATCTCTGCAAGGGATTCGAATTATCCATGCAACAGCAGGGGTGGGGAGGACGATGCTGATTAGCGATGTTGGCAAGGTATATGCCACTGGGGACCGCTTTGTTGAGGTTGATTATGAGCTTGAAAGGTCTAAAATGGCTTCTACTCCAGTGCTGGTTGATGCTTTAAAGAACATTTTTGTGGTGCAAGCTGCAATAGGAAACTTCTTCACTGCTGTGTTGTCAAGAGAAGGCGGAGTTTACACATTTTGTTGGGGCAGTGAGGCTAAACTAGGCCACCAAACTGATCCGGTTGACATCGAGCCTCGTCCTTTGTTGGGAGCTCTTGAAAACATACCAGTTGTTCAAATAGCAGCTGGATATTGCTTTCTTCTTGTTCTGGCATTTCAACCCGGCGGCATGTCAGTTTATTCTGTGGGGTGTGGCTTGGGAGGGAAGCTAGGCCATGGTTCGAGAAGCAACGAGAAGCAACCAAGGCTGATCGAAGAGTTCGGGGCTTTGAAGCTTCAGCCTGTGGCGGTTGCAGCCGGTGCTTGGCATGCAGCCGTGGTGGGGCATGACGGTCGAGTCTGCACGTGGGGGTGGGGGCGCCACGGGTGCTTGGGCCATGGAAACGAAGAATGTGAATCACGTCCTAAAGTGATCAAGTCATTGAGCCATGTCAAAGCCATCCATGTCGCAACTGGTGATTACACAACTTTCGTCGTAGCCGATGATGGCGATGCATACTCTTTCGGGTGCGGAGAATCTGCTAATCTCGGTCACAATAACCCTGCTGATGAGCAGGAAAACAGGTATGCAGATGTGTTAAGCCCAAAGCTTGTTAAATCATTGAAGGGAGGGAAGGGGAGGGTTGTACAGATAAGCCTTACTAATTCCGTTAACCATAACGCTCACACATTTGCACTGACTGAGTCAGGGAAGCTCTACGCTTTTGGAGCCGGAGATGAAGGGCAGCTCGGGGTTAAGCTCGGGTCTAACCAAACCGTAAGGGGGAGACCGGCACTCGTTGATGTTGATCTGAGCTAG 1611 48.85 MPFFKILFGHCTVPMDRPPVLHPIAAHLATSVLPFQCSQRHCYGESVPGEFRLAAYPSILLHILSSCNLNSCDLAILEATCSFFKQPANLHPDFQLSISELAAFDMCRKRAIFKQMTMEEQKHLKQRCGGSWKLVLRFLLAGEACCRRETSQAVAGPGHSIAVSSKGIAYTFGSNNLGQLGHGTIEEEWRPRPIRSLQGIRIIHATAGVGRTMLISDVGKVYATGDRFVEVDYELERSKMASTPVLVDALKNIFVVQAAIGNFFTAVLSREGGVYTFCWGSEAKLGHQTDPVDIEPRPLLGALENIPVVQIAAGYCFLLVLAFQPGGMSVYSVGCGLGGKLGHGSRSNEKQPRLIEEFGALKLQPVAVAAGAWHAAVVGHDGRVCTWGWGRHGCLGHGNEECESRPKVIKSLSHVKAIHVATGDYTTFVVADDGDAYSFGCGESANLGHNNPADEQENRYADVLSPKLVKSLKGGKGRVVQISLTNSVNHNAHTFALTESGKLYAFGAGDEGQLGVKLGSNQTVRGRPALVDVDLS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20293204 20295534 - Bpe011160.2 Bpe13g01493 114273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01493 536 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 381 IPR000408 -
Bpe13g01493 536 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 272 324 IPR000408 -
Bpe13g01493 536 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 19 536 - -
Bpe13g01493 536 Pfam Regulator of chromosome condensation (RCC1) repeat 381 430 IPR000408 -
Bpe13g01493 536 Pfam Regulator of chromosome condensation (RCC1) repeat 433 483 IPR000408 -
Bpe13g01493 536 Pfam Regulator of chromosome condensation (RCC1) repeat 167 215 IPR000408 -
Bpe13g01493 536 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Bpe13g01493 536 SUPERFAMILY RCC1/BLIP-II 150 453 IPR009091 -
Bpe13g01493 536 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 433 IPR000408 -
Bpe13g01493 536 PRINTS Chromosome condensation regulator RCC1 signature 169 185 IPR000408 -
Bpe13g01493 536 PRINTS Chromosome condensation regulator RCC1 signature 429 450 IPR000408 -
Bpe13g01493 536 PRINTS Chromosome condensation regulator RCC1 signature 371 389 IPR000408 -
Bpe13g01493 536 PRINTS Chromosome condensation regulator RCC1 signature 258 274 IPR000408 -
Bpe13g01493 536 PRINTS Chromosome condensation regulator RCC1 signature 274 288 IPR000408 -
Bpe13g01493 536 PRINTS Chromosome condensation regulator RCC1 signature 150 163 IPR000408 -
Bpe13g01493 536 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 19 536 - -
Bpe13g01493 536 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 368 378 IPR000408 -
Bpe13g01493 536 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 167 218 IPR000408 -
Bpe13g01493 536 SUPERFAMILY RCC1/BLIP-II 461 531 IPR009091 -
Bpe13g01493 536 Gene3D - 144 325 IPR009091 -
Bpe13g01493 536 Gene3D - 326 535 IPR009091 -
Bpe13g01493 536 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 500 IPR000408 -
Bpe13g01493 536 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 536 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01493 - - - jre:108990808 780.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01493 Bpe-Chr13:20293204 Bpe10g00274 Bpe-Chr10:10092131 1.51E-10 dispersed
Bpe11g01813 Bpe-Chr11:14504322 Bpe13g01493 Bpe-Chr13:20293204 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44