Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01498 ATGGAAAATGGGTTCTCTTCTCCCCGAAGCGATGCGTTTCCGGCCGGTCTCCGGGTTCTCGTCGTCGATGACGATCCAACTTGGCTCAAAATTCTCGAAAAGATGCTCAAGAAATGCTCTTACGAAGTGACAACATGTGCTCTAGCTAGGGAAGCACTAAATTTACTCCGAGAAAGGAAAGATGGATACGACATTGTAATCAGCGACGTCAACATGCCCGACATGGACGGCTTTAAACTTCTTGAGCATGTTGGTCTCGAGATGGATCTTCCCGTCATAATGATGTCTGTTGATGGAGAAACAAGTAGAGTCATGAAAGGCGTTCAACACGGAGCTTGTGACTATCTGCTCAAGCCGATAAGGATGAAAGAACTTAGAAATATATGGCAGCATGTGCTCAGAAAGAAGATACACGAGGTTCGGGAAATAGAAAGTCATGATTGTTTTGAAGGAATGTTTGGCCGAACCGGATCGGAGCAATTCGAGGATGGGCAATTTATTCGAGGAGAAGACATGAGTACTTTATTGAAGAAAAGGAAGGATTTTGATAAGCATGATGAGAAAGACATTGGTGATGCTTCTTCGATGAAAAAATCTCGAGTCGTTTGGTCCGTCGATCTTCATCAGAAATTTGTGAAAGCAGTGGATCAGATTGGTTTCCAAAGAGTAGGCCCCAAAAAAATACTTGATTTGATGAATGTGCCATGGCTGACAAGAGAAAATGTTGCTAGCCACTTGCAGAAGTATCGTCTTTACTTGAGTAGGCTGCAAAAGCAAAATGATGGAAAAGGTTGTGGTATGGGAACGAAGCCCTTCGATGTATCTTCAAATGCTCCAACACCAACTTCCTGCCTCCAAAACACGCTACATATGAATCAAAATGAAGCTCAAAATCTCAAACATCCCCTCCCCGGAAACAGCTTCCCTCTTCAGAAAGTCGATACGAAGGGACTTGATTGCAATTTGCAGAGGATTGTCTCCGAGCCTGCGCCAGAGCTCAAACGAGCGATGAGTTCTAGTCCTACGAATTCTAATAAGACCTGGAGCCATTCAGAACCGAATTTTGCAGCATCAGAGCAAACCCAGATTGAAGCTTTAGAAACCCAACTAAAGGCGGAAAGCAAAACGCTCATGGCTTTGAAAAGTGATTTCATCGATCTCCCACTGACGAATCCACAATCTAACTTCCAAGTTGATCAACTTCAATCCATTTCATCGATCGGTTCGAGACCTTCAATAGGAGAAGCGGAGATTACCAGCTCCATCACAACGGTTGGTTTAAATAAAGCGCAATATCTGTCCGACTCTTTTCCTGCTCAACATGGTATCGATGAAGTAAATCATCTTTTCAAACCACCCTCTTCAACTACGTCAATCGGGATGAAAAAGCAGGAACTCATCGAGAGCTGCCTATCCGAAACGGGAAGAGGGCTGCATTCGGACTTGTTTGACAATGACATGCAGCTTTGCTGGCTGCAAGAGGATTGCATTGTCAAGAATTTGGGGCAAAATATAGACTTGACAGATTGCAAAGATTCAGGGCTCATCACTGATTATATTGGACACGATTATTGGTACGATCCCACAGAATATATTCTGATAGATGATGGTATGTTCACATTATAA 1626 43.42 MENGFSSPRSDAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCALAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIHEVREIESHDCFEGMFGRTGSEQFEDGQFIRGEDMSTLLKKRKDFDKHDEKDIGDASSMKKSRVVWSVDLHQKFVKAVDQIGFQRVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKQNDGKGCGMGTKPFDVSSNAPTPTSCLQNTLHMNQNEAQNLKHPLPGNSFPLQKVDTKGLDCNLQRIVSEPAPELKRAMSSSPTNSNKTWSHSEPNFAASEQTQIEALETQLKAESKTLMALKSDFIDLPLTNPQSNFQVDQLQSISSIGSRPSIGEAEITSSITTVGLNKAQYLSDSFPAQHGIDEVNHLFKPPSSTTSIGMKKQELIESCLSETGRGLHSDLFDNDMQLCWLQEDCIVKNLGQNIDLTDCKDSGLITDYIGHDYWYDPTEYILIDDGMFTL 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20363692 20366570 + Bpe011166.1 Bpe13g01498 114278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01498 541 CDD REC_typeB_ARR-like 19 133 - -
Bpe13g01498 541 PIRSF RR_ARR_type-B 1 498 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bpe13g01498 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Bpe13g01498 541 Gene3D - 17 160 - -
Bpe13g01498 541 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Bpe13g01498 541 MobiDBLite consensus disorder prediction 336 351 - -
Bpe13g01498 541 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Bpe13g01498 541 Coils Coil 356 383 - -
Bpe13g01498 541 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 507 IPR045279 GO:0009736
Bpe13g01498 541 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Bpe13g01498 541 MobiDBLite consensus disorder prediction 332 351 - -
Bpe13g01498 541 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Bpe13g01498 541 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Bpe13g01498 541 SUPERFAMILY CheY-like 16 141 IPR011006 -
Bpe13g01498 541 SMART REC_2 17 129 IPR001789 GO:0000160
Bpe13g01498 541 Gene3D - 195 257 - -
Bpe13g01498 541 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11 2 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01498 - - K14491 csv:101204370 554.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00682 Bpe-Chr13:13506862 Bpe13g01498 Bpe-Chr13:20363692 1.07E-93 dispersed
Bpe13g01134 Bpe-Chr13:16879739 Bpe13g01498 Bpe-Chr13:20363692 4.70E-77 dispersed
Bpe13g01498 Bpe-Chr13:20363692 Bpe02g01970 Bpe-Chr2:21547512 4.31E-94 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g01970 . 76 338 Response Regulator Gene Family AT3G16857 50.9 1.2e-67 254.6
Bpe13g01498 . 52 264 Response Regulator Gene Family AT3G16857 51.5 6.7e-55 212.2
Bpe01g00636 BCT,CCT,ECH 17 327 Response Regulator Gene Family AT4G31920 58.1 1.0e-78 291.2
Bpe13g01134 BCT,CCT,ECH 19 277 Response Regulator Gene Family AT4G31920 56.4 3.6e-76 282.7
Bpe02g02148 BCT,CCT,ECH 1 281 Response Regulator Gene Family AT4G31920 51.4 4.7e-76 282.3
Bpe02g01970 . 34 292 Response Regulator Gene Family AT4G31920 54.8 2.4e-72 270.0
Bpe05g00823 BCT,CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 55.8 5.0e-70 262.3
Bpe04g01103 CCT,ECH 25 289 Response Regulator Gene Family AT4G31920 56.3 4.4e-66 249.2
Bpe13g00682 BCT,CCT,ECH 25 299 Response Regulator Gene Family AT4G31920 50.4 1.3e-65 247.7
Bpe13g01498 . 11 256 Response Regulator Gene Family AT4G31920 51.6 8.6e-62 235.0
Bpe02g01970 . 117 285 Response Regulator Gene Family AT1G67710 53.5 1.3e-39 161.0
Bpe13g00682 BCT,CCT,ECH 108 271 Response Regulator Gene Family AT1G67710 51.2 1.8e-38 157.1
Bpe01g00636 BCT,CCT,ECH 15 386 Response Regulator Gene Family AT2G25180 56.1 1.8e-94 343.6
Bpe02g01970 . 36 292 Response Regulator Gene Family AT2G25180 57.6 4.3e-75 279.3
Bpe13g00682 BCT,CCT,ECH 27 298 Response Regulator Gene Family AT2G25180 56.7 6.8e-73 271.9
Bpe13g01498 . 11 256 Response Regulator Gene Family AT2G25180 54.0 1.5e-67 254.2
Bpe02g01970 . 97 341 Response Regulator Gene Family AT2G01760 55.0 2.7e-60 229.2
Bpe08g00654 BCT,CCT,ECH 83 279 Response Regulator Gene Family AT2G01760 55.8 2.2e-46 183.0
Bpe01g00636 BCT,CCT,ECH 78 272 Response Regulator Gene Family AT2G01760 52.3 2.4e-40 162.9
Bpe05g00823 BCT,CCT,ECH 27 271 Response Regulator Gene Family AT5G58080 60.4 4.6e-67 252.7
Bpe13g00682 BCT,CCT,ECH 27 313 Response Regulator Gene Family AT5G58080 52.9 3.0e-66 250.0
Bpe05g00823 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 73.5 8.4e-80 295.0
Bpe13g00682 BCT,CCT,ECH 5 251 Response Regulator Gene Family AT4G16110 68.2 1.2e-78 291.2
Bpe04g01103 CCT,ECH 26 268 Response Regulator Gene Family AT4G16110 68.5 4.3e-76 282.7
Bpe02g01970 . 35 264 Response Regulator Gene Family AT4G16110 58.8 1.1e-66 251.5
Bpe08g00654 BCT,CCT,ECH 12 253 Response Regulator Gene Family AT4G16110 58.2 1.9e-60 230.7
Bpe13g01498 . 10 235 Response Regulator Gene Family AT4G16110 53.0 3.1e-58 223.4
Bpe01g00636 BCT,CCT,ECH 7 248 Response Regulator Gene Family AT4G16110 56.8 1.9e-55 214.2
Bpe13g00265 CCT,ECH 24 148 Response Regulator Gene Family AT3G48100 80.3 4.6e-52 201.1
Bpe15g00623 CCT,ECH 13 140 Response Regulator Gene Family AT3G48100 76.2 1.9e-50 195.7
Bpe10g00821 CCT,ECH 22 159 Response Regulator Gene Family AT3G48100 71.0 2.8e-49 191.8
Bpe11g01741 CCT,ECH 32 160 Response Regulator Gene Family AT3G48100 71.3 2.4e-48 188.7
Bpe04g01386 CCT 7 154 Response Regulator Gene Family AT3G48100 55.4 1.7e-38 156.0
Bpe04g01964 . 3 153 Response Regulator Gene Family AT3G48100 52.3 1.9e-37 152.5
Bpe10g00821 CCT,ECH 1 164 Response Regulator Gene Family AT1G59940 66.7 5.9e-55 211.5
Bpe11g01741 CCT,ECH 1 163 Response Regulator Gene Family AT1G59940 65.9 5.9e-55 211.5
Bpe13g00265 CCT,ECH 1 150 Response Regulator Gene Family AT1G59940 67.5 1.7e-49 193.4
Bpe15g00623 CCT,ECH 4 139 Response Regulator Gene Family AT1G59940 69.3 2.7e-47 186.0
Bpe04g01386 CCT 12 150 Response Regulator Gene Family AT1G59940 59.0 1.3e-38 157.1
Bpe04g01964 . 8 149 Response Regulator Gene Family AT1G59940 60.6 1.3e-38 157.1
Bpe15g00976 . 10 170 Response Regulator Gene Family AT1G59940 53.7 1.2e-36 150.6
Bpe10g00821 CCT,ECH 19 216 Response Regulator Gene Family AT1G10470 61.1 2.9e-54 208.8
Bpe11g01741 CCT,ECH 19 193 Response Regulator Gene Family AT1G10470 63.6 1.1e-53 206.8
Bpe13g00265 CCT,ECH 15 147 Response Regulator Gene Family AT1G10470 74.6 2.2e-49 192.6
Bpe15g00623 CCT,ECH 4 139 Response Regulator Gene Family AT1G10470 70.8 1.2e-47 186.8
Bpe04g01386 CCT 14 162 Response Regulator Gene Family AT1G10470 59.1 4.5e-39 158.3
Bpe15g00976 . 10 157 Response Regulator Gene Family AT1G10470 56.1 1.2e-36 150.2
Bpe13g00265 CCT,ECH 24 148 Response Regulator Gene Family AT3G48100 80.3 4.6e-52 201.1
Bpe15g00623 CCT,ECH 13 140 Response Regulator Gene Family AT3G48100 76.2 1.9e-50 195.7
Bpe10g00821 CCT,ECH 22 159 Response Regulator Gene Family AT3G48100 71.0 2.8e-49 191.8
Bpe11g01741 CCT,ECH 32 160 Response Regulator Gene Family AT3G48100 71.3 2.4e-48 188.7
Bpe04g01386 CCT 7 154 Response Regulator Gene Family AT3G48100 55.4 1.7e-38 156.0
Bpe04g01964 . 3 153 Response Regulator Gene Family AT3G48100 52.3 1.9e-37 152.5
Bpe13g00265 CCT,ECH 16 148 Response Regulator Gene Family AT5G62920 80.6 1.1e-53 206.5
Bpe15g00623 CCT,ECH 13 140 Response Regulator Gene Family AT5G62920 79.1 1.0e-51 199.9
Bpe10g00821 CCT,ECH 23 159 Response Regulator Gene Family AT5G62920 72.3 9.0e-48 186.8
Bpe11g01741 CCT,ECH 30 160 Response Regulator Gene Family AT5G62920 71.0 3.4e-47 184.9
Bpe04g01386 CCT 14 150 Response Regulator Gene Family AT5G62920 59.9 5.9e-39 157.5
Bpe04g01964 . 10 152 Response Regulator Gene Family AT5G62920 53.8 1.9e-37 152.5
Bpe13g00265 CCT,ECH 5 151 Response Regulator Gene Family AT1G19050 71.8 3.9e-52 201.4
Bpe15g00623 CCT,ECH 12 140 Response Regulator Gene Family AT1G19050 75.4 1.8e-49 192.6
Bpe10g00821 CCT,ECH 31 204 Response Regulator Gene Family AT1G19050 58.9 3.0e-44 175.3
Bpe11g01741 CCT,ECH 31 191 Response Regulator Gene Family AT1G19050 56.5 2.2e-42 169.1
Bpe04g01386 CCT 5 203 Response Regulator Gene Family AT2G41310 57.1 1.5e-57 219.5
Bpe04g01964 . 1 151 Response Regulator Gene Family AT2G41310 60.8 2.3e-45 179.1
Bpe10g00821 CCT,ECH 26 170 Response Regulator Gene Family AT2G41310 56.6 2.2e-40 162.5
Bpe11g01741 CCT,ECH 33 166 Response Regulator Gene Family AT2G41310 57.4 2.9e-40 162.2
Bpe15g00976 . 3 161 Response Regulator Gene Family AT2G41310 54.7 4.9e-40 161.4
Bpe02g00640 . 16 167 Response Regulator Gene Family AT2G41310 54.2 1.4e-39 159.8
Bpe13g00265 CCT,ECH 19 147 Response Regulator Gene Family AT2G41310 60.1 1.9e-39 159.5
Bpe15g00623 CCT,ECH 8 148 Response Regulator Gene Family AT2G41310 55.3 7.1e-39 157.5
Bpe04g01386 CCT 5 203 Response Regulator Gene Family AT3G57040 58.3 3.3e-63 238.4
Bpe04g01964 . 1 176 Response Regulator Gene Family AT3G57040 54.0 7.9e-49 190.7
Bpe15g00976 . 3 161 Response Regulator Gene Family AT3G57040 57.3 1.1e-42 170.2
Bpe11g01741 CCT,ECH 31 167 Response Regulator Gene Family AT3G57040 57.5 1.9e-42 169.5
Bpe10g00821 CCT,ECH 26 161 Response Regulator Gene Family AT3G57040 59.3 5.5e-42 167.9
Bpe13g00265 CCT,ECH 23 147 Response Regulator Gene Family AT3G57040 61.8 1.0e-40 163.7
Bpe15g00623 CCT,ECH 12 150 Response Regulator Gene Family AT3G57040 57.6 1.3e-40 163.3
Bpe02g00640 . 16 167 Response Regulator Gene Family AT3G57040 54.2 5.1e-40 161.4
Bpe13g00265 CCT,ECH 21 158 Response Regulator Gene Family AT1G74890 72.7 1.5e-51 199.5
Bpe15g00623 CCT,ECH 10 161 Response Regulator Gene Family AT1G74890 66.2 8.2e-50 193.7
Bpe10g00821 CCT,ECH 27 218 Response Regulator Gene Family AT1G74890 55.2 2.5e-46 182.2
Bpe11g01741 CCT,ECH 25 164 Response Regulator Gene Family AT1G74890 65.7 2.7e-45 178.7
Bpe04g01386 CCT 12 150 Response Regulator Gene Family AT1G74890 59.0 3.8e-39 158.3
Bpe04g01964 . 4 154 Response Regulator Gene Family AT1G74890 52.3 1.1e-38 156.8
Bpe11g01741 CCT,ECH 30 157 Response Regulator Gene Family AT2G40670 61.1 3.6e-40 161.4
Bpe10g00821 CCT,ECH 30 161 Response Regulator Gene Family AT2G40670 62.2 6.2e-40 160.6
Bpe04g01386 CCT 1 153 Response Regulator Gene Family AT2G40670 51.8 2.6e-38 155.2
Bpe13g00265 CCT,ECH 23 147 Response Regulator Gene Family AT2G40670 61.8 7.5e-38 153.7
Bpe15g00623 CCT,ECH 12 144 Response Regulator Gene Family AT2G40670 58.3 2.2e-37 152.1
Bpe10g00821 CCT,ECH 22 161 Response Regulator Gene Family AT3G56380 61.0 8.0e-42 166.8
Bpe11g01741 CCT,ECH 16 157 Response Regulator Gene Family AT3G56380 56.4 8.9e-41 163.3
Bpe04g01386 CCT 1 153 Response Regulator Gene Family AT3G56380 54.5 9.8e-40 159.8
Bpe13g00265 CCT,ECH 16 147 Response Regulator Gene Family AT3G56380 59.7 2.9e-39 158.3
Bpe15g00623 CCT,ECH 12 143 Response Regulator Gene Family AT3G56380 58.5 3.2e-38 154.8
Bpe02g01970 . 76 338 Response Regulator Gene Family AT3G16857 50.9 1.2e-67 254.6
Bpe13g01498 . 52 264 Response Regulator Gene Family AT3G16857 51.5 6.7e-55 212.2
Bpe05g00823 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 73.5 8.4e-80 295.0
Bpe13g00682 BCT,CCT,ECH 5 251 Response Regulator Gene Family AT4G16110 68.2 1.2e-78 291.2
Bpe04g01103 CCT,ECH 26 268 Response Regulator Gene Family AT4G16110 68.5 4.3e-76 282.7
Bpe02g01970 . 35 264 Response Regulator Gene Family AT4G16110 58.8 1.1e-66 251.5
Bpe08g00654 BCT,CCT,ECH 12 253 Response Regulator Gene Family AT4G16110 58.2 1.9e-60 230.7
Bpe13g01498 . 10 235 Response Regulator Gene Family AT4G16110 53.0 3.1e-58 223.4
Bpe01g00636 BCT,CCT,ECH 7 248 Response Regulator Gene Family AT4G16110 56.8 1.9e-55 214.2
Bpe01g00636 BCT,CCT,ECH 17 327 Response Regulator Gene Family AT4G31920 58.1 1.0e-78 291.2
Bpe13g01134 BCT,CCT,ECH 19 277 Response Regulator Gene Family AT4G31920 56.4 3.6e-76 282.7
Bpe02g02148 BCT,CCT,ECH 1 281 Response Regulator Gene Family AT4G31920 51.4 4.7e-76 282.3
Bpe02g01970 . 34 292 Response Regulator Gene Family AT4G31920 54.8 2.4e-72 270.0
Bpe05g00823 BCT,CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 55.8 5.0e-70 262.3
Bpe04g01103 CCT,ECH 25 289 Response Regulator Gene Family AT4G31920 56.3 4.4e-66 249.2
Bpe13g00682 BCT,CCT,ECH 25 299 Response Regulator Gene Family AT4G31920 50.4 1.3e-65 247.7
Bpe13g01498 . 11 256 Response Regulator Gene Family AT4G31920 51.6 8.6e-62 235.0
Bpe02g01970 . 117 285 Response Regulator Gene Family AT1G67710 53.5 1.3e-39 161.0
Bpe13g00682 BCT,CCT,ECH 108 271 Response Regulator Gene Family AT1G67710 51.2 1.8e-38 157.1
Bpe01g00636 BCT,CCT,ECH 15 386 Response Regulator Gene Family AT2G25180 56.1 1.8e-94 343.6
Bpe02g01970 . 36 292 Response Regulator Gene Family AT2G25180 57.6 4.3e-75 279.3
Bpe13g00682 BCT,CCT,ECH 27 298 Response Regulator Gene Family AT2G25180 56.7 6.8e-73 271.9
Bpe13g01498 . 11 256 Response Regulator Gene Family AT2G25180 54.0 1.5e-67 254.2
Bpe02g01970 . 97 341 Response Regulator Gene Family AT2G01760 55.0 2.7e-60 229.2
Bpe08g00654 BCT,CCT,ECH 83 279 Response Regulator Gene Family AT2G01760 55.8 2.2e-46 183.0
Bpe01g00636 BCT,CCT,ECH 78 272 Response Regulator Gene Family AT2G01760 52.3 2.4e-40 162.9
Bpe05g00823 BCT,CCT,ECH 27 271 Response Regulator Gene Family AT5G58080 60.4 4.6e-67 252.7
Bpe13g00682 BCT,CCT,ECH 27 313 Response Regulator Gene Family AT5G58080 52.9 3.0e-66 250.0
Bpe15g01310 . 20 271 Response Regulator Gene Family AT5G60100 56.6 1.5e-63 240.4
Bpe04g00712 . 65 216 Response Regulator Gene Family AT5G60100 69.1 5.4e-53 205.3
Bpe05g01054 CCT,ECH 21 154 Response Regulator Gene Family AT5G60100 61.9 1.0e-43 174.5
Bpe15g01310 . 65 197 Response Regulator Gene Family AT5G24470 59.4 3.8e-41 166.4
Bpe04g00712 . 74 218 Response Regulator Gene Family AT5G24470 53.8 2.3e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007972 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 3 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22398 PF00072 Response_reg 5.30E-25 CL0304 Bpe TF