Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01498 ATGGAAAATGGGTTCTCTTCTCCCCGAAGCGATGCGTTTCCGGCCGGTCTCCGGGTTCTCGTCGTCGATGACGATCCAACTTGGCTCAAAATTCTCGAAAAGATGCTCAAGAAATGCTCTTACGAAGTGACAACATGTGCTCTAGCTAGGGAAGCACTAAATTTACTCCGAGAAAGGAAAGATGGATACGACATTGTAATCAGCGACGTCAACATGCCCGACATGGACGGCTTTAAACTTCTTGAGCATGTTGGTCTCGAGATGGATCTTCCCGTCATAATGATGTCTGTTGATGGAGAAACAAGTAGAGTCATGAAAGGCGTTCAACACGGAGCTTGTGACTATCTGCTCAAGCCGATAAGGATGAAAGAACTTAGAAATATATGGCAGCATGTGCTCAGAAAGAAGATACACGAGGTTCGGGAAATAGAAAGTCATGATTGTTTTGAAGGAATGTTTGGCCGAACCGGATCGGAGCAATTCGAGGATGGGCAATTTATTCGAGGAGAAGACATGAGTACTTTATTGAAGAAAAGGAAGGATTTTGATAAGCATGATGAGAAAGACATTGGTGATGCTTCTTCGATGAAAAAATCTCGAGTCGTTTGGTCCGTCGATCTTCATCAGAAATTTGTGAAAGCAGTGGATCAGATTGGTTTCCAAAGAGTAGGCCCCAAAAAAATACTTGATTTGATGAATGTGCCATGGCTGACAAGAGAAAATGTTGCTAGCCACTTGCAGAAGTATCGTCTTTACTTGAGTAGGCTGCAAAAGCAAAATGATGGAAAAGGTTGTGGTATGGGAACGAAGCCCTTCGATGTATCTTCAAATGCTCCAACACCAACTTCCTGCCTCCAAAACACGCTACATATGAATCAAAATGAAGCTCAAAATCTCAAACATCCCCTCCCCGGAAACAGCTTCCCTCTTCAGAAAGTCGATACGAAGGGACTTGATTGCAATTTGCAGAGGATTGTCTCCGAGCCTGCGCCAGAGCTCAAACGAGCGATGAGTTCTAGTCCTACGAATTCTAATAAGACCTGGAGCCATTCAGAACCGAATTTTGCAGCATCAGAGCAAACCCAGATTGAAGCTTTAGAAACCCAACTAAAGGCGGAAAGCAAAACGCTCATGGCTTTGAAAAGTGATTTCATCGATCTCCCACTGACGAATCCACAATCTAACTTCCAAGTTGATCAACTTCAATCCATTTCATCGATCGGTTCGAGACCTTCAATAGGAGAAGCGGAGATTACCAGCTCCATCACAACGGTTGGTTTAAATAAAGCGCAATATCTGTCCGACTCTTTTCCTGCTCAACATGGTATCGATGAAGTAAATCATCTTTTCAAACCACCCTCTTCAACTACGTCAATCGGGATGAAAAAGCAGGAACTCATCGAGAGCTGCCTATCCGAAACGGGAAGAGGGCTGCATTCGGACTTGTTTGACAATGACATGCAGCTTTGCTGGCTGCAAGAGGATTGCATTGTCAAGAATTTGGGGCAAAATATAGACTTGACAGATTGCAAAGATTCAGGGCTCATCACTGATTATATTGGACACGATTATTGGTACGATCCCACAGAATATATTCTGATAGATGATGGTATGTTCACATTATAA 1626 43.42 MENGFSSPRSDAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCALAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIHEVREIESHDCFEGMFGRTGSEQFEDGQFIRGEDMSTLLKKRKDFDKHDEKDIGDASSMKKSRVVWSVDLHQKFVKAVDQIGFQRVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKQNDGKGCGMGTKPFDVSSNAPTPTSCLQNTLHMNQNEAQNLKHPLPGNSFPLQKVDTKGLDCNLQRIVSEPAPELKRAMSSSPTNSNKTWSHSEPNFAASEQTQIEALETQLKAESKTLMALKSDFIDLPLTNPQSNFQVDQLQSISSIGSRPSIGEAEITSSITTVGLNKAQYLSDSFPAQHGIDEVNHLFKPPSSTTSIGMKKQELIESCLSETGRGLHSDLFDNDMQLCWLQEDCIVKNLGQNIDLTDCKDSGLITDYIGHDYWYDPTEYILIDDGMFTL 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20363692 20366570 + Bpe011166.1 Bpe13g01498 114278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01498 541 CDD REC_typeB_ARR-like 19 133 - -
Bpe13g01498 541 PIRSF RR_ARR_type-B 1 498 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bpe13g01498 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Bpe13g01498 541 Gene3D - 17 160 - -
Bpe13g01498 541 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Bpe13g01498 541 MobiDBLite consensus disorder prediction 336 351 - -
Bpe13g01498 541 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Bpe13g01498 541 Coils Coil 356 383 - -
Bpe13g01498 541 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 507 IPR045279 GO:0009736
Bpe13g01498 541 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Bpe13g01498 541 MobiDBLite consensus disorder prediction 332 351 - -
Bpe13g01498 541 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Bpe13g01498 541 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Bpe13g01498 541 SUPERFAMILY CheY-like 16 141 IPR011006 -
Bpe13g01498 541 SMART REC_2 17 129 IPR001789 GO:0000160
Bpe13g01498 541 Gene3D - 195 257 - -
Bpe13g01498 541 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11 2 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00682 Bpe-Chr13:13506862 Bpe13g01498 Bpe-Chr13:20363692 1.07E-93 dispersed
Bpe13g01134 Bpe-Chr13:16879739 Bpe13g01498 Bpe-Chr13:20363692 4.70E-77 dispersed
Bpe13g01498 Bpe-Chr13:20363692 Bpe02g01970 Bpe-Chr2:21547512 4.31E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22398 PF00072 Response_reg 5.30E-25 CL0304 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01498 - K14491 csv:101204370 554.288