Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g01504 ATGGATATCATTGAGGTTGAAGAAAATTTGTTTGCAGTCAGCGATGCCAAGCTACATGGACAGATGTGCAAGATACTGTCTGCAATGTATTGCAAAGTATTATCTATTTTCCCATGTTTAGAAGCAGCAAAGCCAAGAAGTAAGTCAGGCATTCAAGCATTATGCTCGTTGCATGTGGCAATGGAGAAGACAAAAAATATTCTTCAACACTGCTCAGAATGTAGCAAACTCTACTTGGCTATAACCCGAGAGTCTGTCCTGTCGAAATTTGAGAAAGCAAGATTTTGTCTCGCAGACAGTCTCAAACGGGTCGAAGATATTGTTCCACAATCTGTTGGCTTTCAGATACAAGAGATAATTTGTGAACTTGAGAGCATTGAGTTTTCACTTGATCCATTGGAGAAGCAAGTCGGCAATGATTTGATAATACTACTTCAACAAGAGCGAAAAGTTAGCGACTCCATTGACAATAGCGAGTTTGAATCTTTTCATCAAGCTGCATTGAAACTTGGAATAATCTCTTCTCGAACAGCCCTTACAGAGAGAAGAGCCTTGAAGAAACTCGTCGAAAAAGCTCGCACTGAAGAAGACAAGCGGAAAGAATCTATCGTGGCTTACCTTTTGCATCTCATGAGGAAATACTCAAAATTTTTTCGGAATGAGCTTTCTGATGAAAACGACTCACCTGGCTCTACGCCGTGTTCACCTGTGGAAATCAGTCCTGGTTGTATCAATCAAACCTTTGAAAGGCAACTATTGAAGCATAGTTCAATTAATTTCAAGCCCGGAAATAAGAAATCAGGGCAGATGACCATTCCACCTGAAGAACTAAGGTGTCCAATATCATTGCACCTCATGTATGACCCTGTAATTATAGCTTCTGGCCAAACATACGATAGGAGTTGTATTGAGAAATGGTTTAATGATGGTCATAGCTCCTGTCCAAAGACTCAACAGAAGCTATCTCATCTTTCTCTAACGCCTAATTACTGCGTTAAGAGCCTCATTGCTAGTTGGTGCGAGCAAAATGGAGTTCCTCTTCCAGATGCCCCACCAGAGAGTCTGGATCTTAACTATTGGAGGCCTGGATTATCTGAATGTGAGTCCGTTAGTTCAAGATCTATGGACAGCCTTGGCTCTTGCAAACTGAAGGAAGTCAAGGTTGTTCCATTAGAGGAAAGTTGTATCATTGCGGAGACTGAAGGAATCACATTAGATCGTTTATCTGCAGAGAAGAAAGAGTCAGATTTGAATATATTTGATTCATTCAAGTATTTCCTGACGGTTTTGAATGAAGGAGAAGACTTAATGAAAAAGTGTAAGGTGGTTGAACAGATAAGGTTCTTTCTGAAGGATGATGAGGAGGCCAGGATGGTCATGGGAGCTAAAGGGTTTGTTCAAACACTGATTAAGTTTCTTCAATTAGCTGTAAAAGAAGGGCATTCAAAAGCTCAAGAAAGTGGAGCCATGGCACTCTTTAACCTGGCTGTCAACAATTGCAGAAACAAGGAAATAATGTTGAAAGCCGGGGTTATTTCATTGTTGGAGCAGATGATCTTGAACTCTGATTCCCACGAGTATGCGACAGCCCTCTATCTAAATCTTTCTTGCCTTGAAGACGCCAAGGCTATCATTGGTCTAAGCTGTGCTGTTCCTTTCTTGTGTCATCTTCTTCAAGCTAATGCCAAACCCCTCTGCAAGCTTGATGCTCTCCATGCCCTTTACAATCTTTCTACTCTGCCCTCCAACATTTCTAACCTCCTTTCTGCTGGAGTCATAAGTGGTCTTCAATCCCTACTTGCAGACCCTGGTGATCATGGATGGAATGAGAGGGCCATAGCAGTCTTGATACATTTGGCGTTAACCCAATCGGGAAAAGACGAAATGAGATCTGCCTCAGGCTTGATTAGTGCATTGGCAAGAATTGTGGACAGTGGTGAAGGTATAGAGCAGGAGCAATGTGTCTCATGTCTCTTGATCTTGTGTGATGGCAATGAAAGCTGCTGCCAAATGGTCCTGCAAGAAGGGGTGATTCCAGGATTGGTGTCGATGTCTGTCAATGGGACGGGCAGAGGTAGGGAGAAGGCTCAAAAGCTTTTGATGTTGTTCCGGGAGCAAAGGCAGCGAGAGCAACCGCCCACAGAATGGGGCGAGAGTGGTGGAAATTTCATTTCGCCCTCACAAATGAAGCCGCTCTGCAAATCAACGTCGAGAAGAGGAATGGGGAAAGCTTTGAGCTTTTTGTGGAAGAGTAAAAGTCATTCAGTTAACCAGTGGTGA 2280 42.85 MDIIEVEENLFAVSDAKLHGQMCKILSAMYCKVLSIFPCLEAAKPRSKSGIQALCSLHVAMEKTKNILQHCSECSKLYLAITRESVLSKFEKARFCLADSLKRVEDIVPQSVGFQIQEIICELESIEFSLDPLEKQVGNDLIILLQQERKVSDSIDNSEFESFHQAALKLGIISSRTALTERRALKKLVEKARTEEDKRKESIVAYLLHLMRKYSKFFRNELSDENDSPGSTPCSPVEISPGCINQTFERQLLKHSSINFKPGNKKSGQMTIPPEELRCPISLHLMYDPVIIASGQTYDRSCIEKWFNDGHSSCPKTQQKLSHLSLTPNYCVKSLIASWCEQNGVPLPDAPPESLDLNYWRPGLSECESVSSRSMDSLGSCKLKEVKVVPLEESCIIAETEGITLDRLSAEKKESDLNIFDSFKYFLTVLNEGEDLMKKCKVVEQIRFFLKDDEEARMVMGAKGFVQTLIKFLQLAVKEGHSKAQESGAMALFNLAVNNCRNKEIMLKAGVISLLEQMILNSDSHEYATALYLNLSCLEDAKAIIGLSCAVPFLCHLLQANAKPLCKLDALHALYNLSTLPSNISNLLSAGVISGLQSLLADPGDHGWNERAIAVLIHLALTQSGKDEMRSASGLISALARIVDSGEGIEQEQCVSCLLILCDGNESCCQMVLQEGVIPGLVSMSVNGTGRGREKAQKLLMLFREQRQREQPPTEWGESGGNFISPSQMKPLCKSTSRRGMGKALSFLWKSKSHSVNQW 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20431440 20434666 - Bpe011173.1 Bpe13g01504 114284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g01504 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Bpe13g01504 759 PANTHER U BOX DOMAIN-CONTAINING 1 713 - -
Bpe13g01504 759 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 713 - -
Bpe13g01504 759 CDD RING-Ubox_PUB 277 319 IPR045210 -
Bpe13g01504 759 Gene3D - 432 712 IPR011989 -
Bpe13g01504 759 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Bpe13g01504 759 SUPERFAMILY RING/U-box 268 349 - -
Bpe13g01504 759 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Bpe13g01504 759 SUPERFAMILY ARM repeat 421 705 IPR016024 -
Bpe13g01504 759 SMART arm_5 453 497 IPR000225 GO:0005515
Bpe13g01504 759 SMART arm_5 498 537 IPR000225 GO:0005515
Bpe13g01504 759 SMART arm_5 538 579 IPR000225 GO:0005515
Bpe13g01504 759 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00386 Bpe-Chr2:2517191 Bpe13g01504 Bpe-Chr13:20431440 2.06E-71 dispersed
Bpe13g00442 Bpe-Chr13:11960303 Bpe13g01504 Bpe-Chr13:20431440 6.05E-47 dispersed
Bpe13g01504 Bpe-Chr13:20431440 Bpe11g00764 Bpe-Chr11:5755923 9.74E-61 dispersed
Bpe10g00785 Bpe-Chr10:14013626 Bpe13g01504 Bpe-Chr13:20431440 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g01504 - - qsu:112018265 1056.2