Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00006 ATGCTCCAAACCCTTCGTCTTCCTCGTTTACTTCTTTCCAGACTCTACAGAGACGTTGTCCCTAGTCTCCTTCCTTCCCGCGGTTGCAGAACCCTCCCTTCCTCCTCCGATGGCCGTAGCTTTAACCCCTCCAAGGACGACTATTTTGCAGCCGTCCACCACATCGCCAACATCGTTCGGCGAGACATCTACATGGAGCGAACTCTCAACAAGCTCCAAATTTCTTATCTCAACTCCGAACTCGTCTTTCGCGTCCTCCGCGCTTGCTCCGGCTCCGGCACCGAGGCCTTCCGCTTCTTCAATTGGGCTCGGACTAACCAGCCATCCTATCAACCCACCACCGTCGAGTTCGAAGAGCTCGTTAAGATTCTCGCTCGGGCGAGAAAATACGAATCGATGTGGAAAATTCTTCACCAGATGAAGACTCAGAATCTCCGGATCTCTCCAGATACACTCTCCTTCATCATCCAGGAGTATGGCAAACACGGCCTCATCGATGACGCTGTGAAAATATTCAATAAGAGTACCAAAATTATCGATTGCCCACAAACTGTGCAGGTCTACAATGCCCTGCTTTTCTCCCTATGCGTGACGAAGATGTTTCATGCGGCTTACGCCTTGATTAGGAGAATGATTCGAAAAGGGGTGACTCCAGACAAGAACAGCTATAGCATCCTTGTCAACGGTTGGTGCTTAGCTGGAAAAATGAGAGAGGCTCAGGAATTCTTGGAAGAAATGAGCCAAAAGGGGTTCAATCCTCCTGTGCGAGACCGTGATCTTCTCGTAGAGGGGTTGCTGAACGCTGGATACATTGAATCTGCAAAGGGTATGGTCAGAAAAATGATTAAAGAGGGGTTTATGCCTGAAATTAAAACCTTCAATTCTTTGATTGATGCAATTTGTAAATCGGGGGAAGTAGACTTTTGCATTGATACTTGGCATGAAGTGTGTAAATTAGGCCTGTACCCTGATATGAACACTTACAAGGTTCTAATTCCTGCTGTTTCCAAGATGGGTAGGATTGACAATGCATTTGAGCTCTTGCATAAATCGATTGAAGATGGGCATAAGCCATTTCCCAGTCTTTATGCTCCAATAATTAAGGGTTTATTTAGGAGGGGTCAGTTTGATGATGCATTTTGCTTCTTCAGTGATATGAAAGTTAAGGGTCATCCACCAAATAGACCAGTTTATACAATGCTGATAACGATGTGTGGGCGTGGTGGGAAGTATGTCGAGGCGGCTAATTATTTGGTGGAGATGACAGAATTTGGCTTGACACCAATTGCCAGGTGCTTTGACATGGTCACGGATGGGTTGAAGACTTGTGGGAAGCATGATTTAGCCCAGAAAATTGAACATTTGGAAGTTTCTATCCGAGGTGTTTGA 1389 46.08 MLQTLRLPRLLLSRLYRDVVPSLLPSRGCRTLPSSSDGRSFNPSKDDYFAAVHHIANIVRRDIYMERTLNKLQISYLNSELVFRVLRACSGSGTEAFRFFNWARTNQPSYQPTTVEFEELVKILARARKYESMWKILHQMKTQNLRISPDTLSFIIQEYGKHGLIDDAVKIFNKSTKIIDCPQTVQVYNALLFSLCVTKMFHAAYALIRRMIRKGVTPDKNSYSILVNGWCLAGKMREAQEFLEEMSQKGFNPPVRDRDLLVEGLLNAGYIESAKGMVRKMIKEGFMPEIKTFNSLIDAICKSGEVDFCIDTWHEVCKLGLYPDMNTYKVLIPAVSKMGRIDNAFELLHKSIEDGHKPFPSLYAPIIKGLFRRGQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGKYVEAANYLVEMTEFGLTPIARCFDMVTDGLKTCGKHDLAQKIEHLEVSIRGV 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 158941 160329 - Bpe006665.1 Bpe14g00006 114315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00006 462 TIGRFAM PPR: pentatricopeptide repeat domain 187 219 IPR002885 -
Bpe14g00006 462 TIGRFAM PPR: pentatricopeptide repeat domain 292 324 IPR002885 -
Bpe14g00006 462 TIGRFAM PPR: pentatricopeptide repeat domain 222 253 IPR002885 -
Bpe14g00006 462 TIGRFAM PPR: pentatricopeptide repeat domain 363 394 IPR002885 -
Bpe14g00006 462 TIGRFAM PPR: pentatricopeptide repeat domain 397 428 IPR002885 -
Bpe14g00006 462 Pfam PPR repeat 214 247 IPR002885 -
Bpe14g00006 462 Gene3D Tetratricopeptide repeat domain 48 177 IPR011990 GO:0005515
Bpe14g00006 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Bpe14g00006 462 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 30 462 - -
Bpe14g00006 462 Pfam PPR repeat 261 286 IPR002885 -
Bpe14g00006 462 Pfam PPR repeat 153 174 IPR002885 -
Bpe14g00006 462 Gene3D Tetratricopeptide repeat domain 260 459 IPR011990 GO:0005515
Bpe14g00006 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Bpe14g00006 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Bpe14g00006 462 Pfam PPR repeat family 288 335 IPR002885 -
Bpe14g00006 462 Pfam PPR repeat family 365 405 IPR002885 -
Bpe14g00006 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Bpe14g00006 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Bpe14g00006 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Bpe14g00006 462 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 462 - -
Bpe14g00006 462 Gene3D Tetratricopeptide repeat domain 178 252 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00006 - - - mcha:111019612 708.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00006 Bpe-Chr14:158941 Bpe14g00395 Bpe-Chr14:3696294 1.29E-20 dispersed
Bpe14g00006 Bpe-Chr14:158941 Bpe14g00495 Bpe-Chr14:4411505 1.50E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007860 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00006 Bpe_Chr14 FPKM 76.794746 79.187714 25.930147 20.958046 18.609045 17.852243 13.756592 31.102539 31.723368 26.925966