Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00022 ATGGGGTGGATTATGGAAGTGGACGACAGCGACGAAGGCGGCGATGTCTTGATTCCTCCGCCCAATTTCTCCATGGTTGAGGATGGAATTTTTAGATCCAGTTTTCCTCATCCTTCCAACTTTTCTTTTATTCGGACGCTGAATCTTCGCTCAGTCTTATATTTGTGTACAGACCCATATCCAGAAGAAAATATGGAGTTTCTTCGAGCCCAAAATATTCGGCTTTTTCAATTTGGAATAGAGGGGAAAACGGATCCTCCTGTAGCTATTCCGAAGGCTACGATCATGAATGCGTTGAAAGTTCTAATCGATGTTAGGAATCACCCCATCTTGATCCATTGCAAGGCGGGGAAGCATCGAACAGGCTGTCTTGTTGGTTGCCTGCGGAAATTGCAGAACTGGTGTTTGTCCTCGGTGCTGGAGGAGTATGGGCGCTTTGCTGGTGTGAAATCAAGGAAGGCCGATCTGAGATTCATCGAGACATTTGATATTTTCTTATTGAGACAATGCCTTCACAGCATCATATACCAGTATCAAGGATACAGCTCGAAGAAAAGGCGCCTTCTCTACAAAGAAGAGACTGTACAAACACCATCGAAAATCGCATCAAGTTAA 615 44.55 MGWIMEVDDSDEGGDVLIPPPNFSMVEDGIFRSSFPHPSNFSFIRTLNLRSVLYLCTDPYPEENMEFLRAQNIRLFQFGIEGKTDPPVAIPKATIMNALKVLIDVRNHPILIHCKAGKHRTGCLVGCLRKLQNWCLSSVLEEYGRFAGVKSRKADLRFIETFDIFLLRQCLHSIIYQYQGYSSKKRRLLYKEETVQTPSKIASS 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 430444 432391 + Bpe006682.1 Bpe14g00022 114331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00022 204 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 186 - -
Bpe14g00022 204 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 164 IPR029021 -
Bpe14g00022 204 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 176 IPR020422 GO:0006470|GO:0008138
Bpe14g00022 204 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 93 125 IPR000387 GO:0016311|GO:0016791
Bpe14g00022 204 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 13 186 - -
Bpe14g00022 204 CDD PFA-DSP_Siw14 17 163 - -
Bpe14g00022 204 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Bpe14g00022 204 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Bpe14g00022 204 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Bpe14g00022 204 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Bpe14g00022 204 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Bpe14g00022 204 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Bpe14g00022 204 Pfam Tyrosine phosphatase family 17 164 IPR004861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00022 K18045 SIW14, OCA3; tyrosine-protein phosphatase SIW14 [EC:3.1.3.48] - zju:107412514 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00275 Bpe-Chr12:2961721 Bpe14g00022 Bpe-Chr14:430444 6.50E-71 dispersed
Bpe14g00022 Bpe-Chr14:430444 Bpe14g00621 Bpe-Chr14:5131870 2.86E-70 dispersed
Bpe14g00022 Bpe-Chr14:430444 Bpe15g00169 Bpe-Chr15:12184162 1.91E-73 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008556 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00022 Bpe_Chr14 FPKM 1.581121 1.333215 2.786094 0.810939 2.184912 1.598692 0.841032 1.707194 0.0 1.135038