Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00030 ATGGATTCGGAAGAGGATGAGTTCGATATGCATGACGCTCACGATGTTGATGACGAAGATTTCTATAGCGGCGGCGAAGACGATGCAGCTGCAGTGGACAGTGATGATGCTGATTTGGCCGATTACGAGTTCATTGATAACGACTCAGATGATTCTGACGGTGTTATCTCGCATCGGCACCAGCCAAACTTTACCATCTTGAGTGAGGCAGATATACACCAGCGCCAAGAGGATGATATCATGAGAGTATCTACCGTTCTTTCAATTCCAAAGGTTTCAGCTAGCATCCTGCTCCGCTATTATAATTGGAGCGTCAGTAAAGTGCACGATGAATGGTTTGCTGACGAAGAAAAAGTTTGTAGGGCTGTAGGCTTGCTGGCCAAACCAGTTGTTGATTTTTCCAATGTGAAAGTACTAGCTTGTGGCATATGTTTTGAAACCTATCCTTCTGATAGGATTTGTGCTGCTTCTTGTGGTCATCCATTTTGCAAAGCGTGCTGGACAGGTTATATTAGTACATCTATTAATGGTGGTCCTGGATGTCTAACGCTGCGATGTCCTGAACCATCTTGCGTTGCTGCTGTTGGCCAAGATACAATTAATATGTTGGCATCAGAGGAAGATAAACAGAAGTATTCTCGTTACTTTGTAAGATCTTATATTGAAGACAATCGGAAGACAAAGTGGTGTCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGAAGTGGAAGCTATGATGTGACATGCCGCTGCTCATATAGCTTTTGCTGGAATGTTCGAATTATGTTTTTGACTAATTGCATCTGGGAACTTCACCTTGTTCAGTGTACAGAAGAAGCTCATCGTCCTGTTGATTGTGGCACAGTGGCCAAATGGATTTTGAAGAACAGTGCTGAATCAGAAAACATGAATTGTCATACTTTTAGTCTGTGTTTTACGTCTTTTCATGTTTTGGGACTTGAATTCTTAGCTTATTATTTGTATATTTTCATGACTCTCCGGCATGACTTTATTTGTGTGTGTTTTGTGTCCTTCCATGACTTTGAGACGTTGCTTGTTAGTTTTCATTGTCTTGGCATGTTATGGTGCATGAATGATCTTTTGTCTCTGTGCATTAAAGGTTCTCTTGGTACCTATTTAAGTGTTTTTAGTATAAAAAAGAAGATTTTGGCTAATTCAAAACCTTGTCCAAAATGCAAAAGACCTATTGAAAAAAATCAAGGGTGTATGCATATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGTGCATGGTCTGATCACGGTGAGCGAACTGGTGGATTTTATGCATGTAACCGTTACGAAACGGCGAAGCAGGAGGGTGTGTATGATGAAGCTGAAAAGAGAAGGGAAATGGCGAAGAACTCTCTTGAGAGGTACACTCATTACTATGAAAGATGGGCTACAAATCAATCGTCCAGGCAAAAAGCACTTACAGATCTCCATCAAATGCAAAATGTGCATCTTGAGAAGCTAAGCGACGTTCAGTGCCAGCCTGAATCACAGCTCAAGTTCATCACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGAAGAGTACTCAAATGGACTTATGCTTATGGTTTTTATCTACCCGAGTACGAACATGCAAAGAGACGTTTCTTTGAGTACTTGCAAGGTGAGGCTGAGTCGGGGCTTGAACGACTTCATCAGTGTGTGGAAAAGGAACTTCAAGTTTATCTCAATGCAGAAGGCCCGTTGAAAGATTTCAATGAGTTTCGCACAAAACTTGCTGGACTAACTAGCGTGACTAGGAACTACTTTGAGAATCTGGTCCGCGCACTTGAAAATGGTCTATCAGACGTGAACTCACACGGTGCTTGCAGCCGTGCAGCTAGCTTGAAGATCATGGGAGGCGGTAGTAGCAGGGGCAGAGGCGGGAAGGGCAAAGGGTCAACATCTAGATCGAGCAGTTCAAGTCGAACAGTCGACAATTCTGATCATTAA 2010 42.54 MDSEEDEFDMHDAHDVDDEDFYSGGEDDAAAVDSDDADLADYEFIDNDSDDSDGVISHRHQPNFTILSEADIHQRQEDDIMRVSTVLSIPKVSASILLRYYNWSVSKVHDEWFADEEKVCRAVGLLAKPVVDFSNVKVLACGICFETYPSDRICAASCGHPFCKACWTGYISTSINGGPGCLTLRCPEPSCVAAVGQDTINMLASEEDKQKYSRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNVRIMFLTNCIWELHLVQCTEEAHRPVDCGTVAKWILKNSAESENMNCHTFSLCFTSFHVLGLEFLAYYLYIFMTLRHDFICVCFVSFHDFETLLVSFHCLGMLWCMNDLLSLCIKGSLGTYLSVFSIKKKILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALTDLHQMQNVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPLKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSRAASLKIMGGGSSRGRGGKGKGSTSRSSSSSRTVDNSDH 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 495938 504481 + Bpe006690.1 Bpe14g00030 114339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00030 669 CDD RING-HC_RBR_TRIAD1_like 141 191 - -
Bpe14g00030 669 ProSiteProfiles Zinc finger RING-type profile. 141 187 IPR001841 -
Bpe14g00030 669 MobiDBLite consensus disorder prediction 1 35 - -
Bpe14g00030 669 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 307 IPR031127 GO:0004842|GO:0016567
Bpe14g00030 669 SUPERFAMILY RING/U-box 392 439 - -
Bpe14g00030 669 SMART ibrneu5 381 446 IPR002867 -
Bpe14g00030 669 SMART ibrneu5 210 289 IPR002867 -
Bpe14g00030 669 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 391 633 IPR031127 GO:0004842|GO:0016567
Bpe14g00030 669 Gene3D - 285 623 - -
Bpe14g00030 669 Coils Coil 458 478 - -
Bpe14g00030 669 ProSiteProfiles TRIAD supradomain profile. 137 450 IPR044066 -
Bpe14g00030 669 MobiDBLite consensus disorder prediction 648 669 - -
Bpe14g00030 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 222 IPR013083 -
Bpe14g00030 669 Pfam Ariadne domain 459 620 IPR045840 -
Bpe14g00030 669 SUPERFAMILY RING/U-box 137 222 - -
Bpe14g00030 669 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 391 633 - -
Bpe14g00030 669 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 307 - -
Bpe14g00030 669 MobiDBLite consensus disorder prediction 638 669 - -
Bpe14g00030 669 Pfam IBR domain, a half RING-finger domain 394 437 IPR002867 -
Bpe14g00030 669 Pfam IBR domain, a half RING-finger domain 210 261 IPR002867 -
Bpe14g00030 669 SUPERFAMILY RING/U-box 211 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00030 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - mnt:21387087 503.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00982 Bpe-Chr5:22642353 Bpe14g00030 Bpe-Chr14:495938 5.86E-91 dispersed
Bpe07g00414 Bpe-Chr7:4176421 Bpe14g00030 Bpe-Chr14:495938 3.39E-20 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe07g00414 . 107 533 ARIADNE family AT4G34370 70.0 1.7e-174 609.0
Bpe07g00414 . 1 483 ARIADNE family AT2G16090 73.9 2.2e-218 755.0
Bpe07g00414 . 1 482 ARIADNE family AT3G27710 61.0 4.7e-174 607.8
Bpe07g00414 . 1 466 ARIADNE family AT3G27720 52.1 2.7e-136 482.3
Bpe14g00030 . 9 636 ARIADNE family AT1G05890 54.2 2.9e-201 698.4
Bpe05g00982 . 58 572 ARIADNE family AT1G05890 63.2 6.4e-188 654.1
Bpe14g00030 . 18 640 ARIADNE family AT1G65430 65.6 6.0e-236 813.5
Bpe05g00982 . 17 625 ARIADNE family AT1G65430 59.3 3.5e-204 708.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00030 Bpe_Chr14 FPKM 6.650316 5.411765 1.951592 1.716652 1.753783 2.86189 1.652618 3.721368 4.377958 3.098797