Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00054 ATGGACTCCGACGAATTATTTTCTTCCCCGAATCTGTTTGATGGCTCATTGGACTCCAACCTAACAAAGCTTCAAATGTCATCATCGCCTTCTGTTATTGTTATTGGCGGTGGTATATCAGGGCTTGCAGCTGCTCGCATCCTCCACGATGCATGTTTTAAGGTAACCTTGCTGGAATCACGGAATAGACTTGGTGGTCGGATCCACACAGACTACTCCTTGGGTTGTCCGGTAGACATGGGAGCATCATGGCTACATGGTGTTTGCAATGAGAATCCCTTGGCTCCACTGATACGTGCTGCAGGCCTTACATTATACCGTACTAGTGGGGACAATTCTGTGCTGTATGACCATGATTTAGAGAGTTACGTGCTTTTTGGCATGGATGGAAATCAAGTTCCTCAAGAGATGGTGATTGACGTAGGTGAGACATTCAAGAAAATTCTTAAAGAGACGGAAAAAGTGAGGGATGAACACGCTGATGATATGTCTGTACTTCAAGCCATTTCGATTGTTCTGAACAGAAATCCAGAATTAAGACAAGAAGGACTTGCCCATGAGGTATTACAGTGGTACATCTGTAGGATGGAAGCTTGGTTTGCTGCAGATGCAGATATGATATCATTGAAAACCTGGGACCAGGCAAAAGTTCTTTCTGGTGGTCATGGACTGATGGTGGAAGGCTATGACCCTTTAATAAAGAATCTTTCAAAAGATATTGGCATACACTTGAGTCACAGGGTTACAAATATAATTTATGGATACAATAAGGTGACAGTTACCGTTGAGGATGGCAGAAACTTTGTTGCTGATGCTGCAATTTTGACAGTCCCACTCGGGATTCTTAAAGCTAATTTGATTCAGTTTGAACCTGAATTTCCCGTTTGGAAAGTAGCTGCAATCAGTGATCTGGGAGTGGGCAACGAAAATAAAATTGCTTTACAATTCAGTCATGTTTTTTGGCCTAACGTGGAACTTTTGGGCATTGTGGCATCCACTTCATATGGTTGTGGTTATTTTTTGAATCTTCACAAGGCAACAGGTCATCCTGTCCTCGTCTACATGGCGTCTGGGAGATTTGCATATGATCTTGAGAAGCTTTCCGATGAATCGGCTGCAGAGCTTGTAATATCACAGCTTAAGAAAATGCTTCCTCATGCTACAAAGCCAGTTCATTATCTTGTATCACGATGGGGAACGGACCCGAATTCTCTTGGTTGCTATTCGTACGACTTGGTGGGAAAACCGGAGGACGTATATGAGAGGCTTAGAGCACCTTTGGGGAATCTTTTCTTTGGAGGAGAAGCTGTAAGCATGGACCACCAGGGGTCAGTGCATGGAGCATACTCAGCTGGAGTAATGGCTGCAGAAAACTGTGAGAGGTATCTTTCAATGAAAAATGGCTGCATTCAAAGTAGTATCAACAAGTTACTCTGTGGTAGCCATTCCACAACTATTCCACTGCAGATTTCAAGGATGTGA 1482 43.39 MDSDELFSSPNLFDGSLDSNLTKLQMSSSPSVIVIGGGISGLAAARILHDACFKVTLLESRNRLGGRIHTDYSLGCPVDMGASWLHGVCNENPLAPLIRAAGLTLYRTSGDNSVLYDHDLESYVLFGMDGNQVPQEMVIDVGETFKKILKETEKVRDEHADDMSVLQAISIVLNRNPELRQEGLAHEVLQWYICRMEAWFAADADMISLKTWDQAKVLSGGHGLMVEGYDPLIKNLSKDIGIHLSHRVTNIIYGYNKVTVTVEDGRNFVADAAILTVPLGILKANLIQFEPEFPVWKVAAISDLGVGNENKIALQFSHVFWPNVELLGIVASTSYGCGYFLNLHKATGHPVLVYMASGRFAYDLEKLSDESAAELVISQLKKMLPHATKPVHYLVSRWGTDPNSLGCYSYDLVGKPEDVYERLRAPLGNLFFGGEAVSMDHQGSVHGAYSAGVMAAENCERYLSMKNGCIQSSINKLLCGSHSTTIPLQISRM 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 881585 884955 - Bpe006712.1 Bpe14g00054 114363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00054 493 Gene3D - 32 457 IPR036188 -
Bpe14g00054 493 SUPERFAMILY FAD/NAD(P)-binding domain 26 463 IPR036188 -
Bpe14g00054 493 PRINTS Flavin-containing amine oxidase signature 31 50 IPR001613 GO:0016491
Bpe14g00054 493 PRINTS Flavin-containing amine oxidase signature 205 227 IPR001613 GO:0016491
Bpe14g00054 493 PRINTS Flavin-containing amine oxidase signature 390 409 IPR001613 GO:0016491
Bpe14g00054 493 PRINTS Flavin-containing amine oxidase signature 441 458 IPR001613 GO:0016491
Bpe14g00054 493 PANTHER POLYAMINE OXIDASE 4 ISOFORM X1-RELATED 7 492 - -
Bpe14g00054 493 SUPERFAMILY FAD-linked reductases, C-terminal domain 305 410 - -
Bpe14g00054 493 Pfam Flavin containing amine oxidoreductase 39 457 IPR002937 GO:0016491
Bpe14g00054 493 PANTHER FLAVIN MONOAMINE OXIDASE 7 492 - -
Bpe14g00054 493 Gene3D - 111 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00054 K17839 PAO4, PAO3, PAO2; polyamine oxidase [EC:1.5.3.17 1.5.3.-] - cit:102624788 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00169 Bpe-Chr5:5505727 Bpe14g00054 Bpe-Chr14:881585 7.36E-53 dispersed
Bpe10g00538 Bpe-Chr10:12443838 Bpe14g00054 Bpe-Chr14:881585 1.65E-34 dispersed
Bpe13g01254 Bpe-Chr13:17780257 Bpe14g00054 Bpe-Chr14:881585 1.53E-26 dispersed
Bpe14g00054 Bpe-Chr14:881585 Bpe02g00363 Bpe-Chr2:2378671 2.69E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00054 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001683 2 3 1 2 1 1 3 2 1 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 5 3 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00054 Bpe_Chr14 FPKM 95.536804 94.316696 96.818611 89.16922 105.85273 98.824348 106.175148 78.630585 83.352158 81.668732