Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00056 ATGGCGACTTTGAAGGCTCAGAAAAGTGTTCTGCTACTTTGCGGCGACTACATGGAAGACTCTGAGACGATGGTACCATTTCAAGCCTTGCAGGCTTACGGGGTTGCAGTTGATGCTGCCTGTCCAGGAAAGAAGGCAGGTGATATATGTCGCACTTGCATTCATGAGATTGGGACTCATCAGACTTACTCTGAATCTCGTGGCCATAATTTCGTACTCAATGCGACATTTGATGAAATTGAGTTTGATAAGTATGATGGGTTGATATTACCTGGAGGACGAGCTCCAGAATATCTTGCAATGGATGGCTCGGTTATGGAGCTGGTGAGGAAATTTTTCAGCTCCGGGAAACCAATTGCCAGTATTTGCCATGGACAGTTGATTTTAGCAGCTGCGGGAGTCGTTAAAGGCCGGAATTGCACATCACTGCCTTTTAACAAGCCAGCTCTGATTGCTGCTGGTGCTATTTGGGTTGAACCGGAATCCATGGCAGCATGCGTTGTTGATGGTAATATTATTACTGCATCTTCATACGTGGGACATCCTGAGTATATTGTGCTCTTTGTGAAGGCACTAGGAGGTAGCATAACTGGTTCAGAGAAAAAAATTCTGTTTCTTTGCGGAGACTACATGGAAGATTATGAGGTTACTGTTCCTCTCCAATCACTTCAAGCTCTTGGTTGCCATGTTGACGCAGTTTGCCCCAAGAAAAATGCTGGCGAGACCTGTCCAACGGCTGTCCATGATTTTGAAGGCGATCAAACTTACAGTGAGAAATCAGGTCACAACTTCACTCTCACGGCTAATTTTGATGGCATAAGTGCATCAAATTATGATGCTCTTGTCATCCCTGGAGGCCGAGCTCCTGAATATTTGGCACTGGATGAAGAAGTCCTCAAAATAGCCCGGGAATTCATGGAGTCTAAAAAGCCAGTTGCATCCATCTGCCATGGCCAGCAGATTTTAGCTGCTGCTGGTGTTCTACAGGGCAAGAAATGTACTGCTTATCCAGCAGTGAAGCTCAATGTCGTCTTAGCGGGAGCTGAATGGCTGGAGCCCGACCCAATAAGCCGTTGTTTTACTGATGGAAACCTTGTGACAGGAGCCGCATGGCCAGGACACCCTGAGTTTGTCTCTCAGTTAATGACACTGCTTGGAATTCGCGTATCATTC 1173 46.38 MATLKAQKSVLLLCGDYMEDSETMVPFQALQAYGVAVDAACPGKKAGDICRTCIHEIGTHQTYSESRGHNFVLNATFDEIEFDKYDGLILPGGRAPEYLAMDGSVMELVRKFFSSGKPIASICHGQLILAAAGVVKGRNCTSLPFNKPALIAAGAIWVEPESMAACVVDGNIITASSYVGHPEYIVLFVKALGGSITGSEKKILFLCGDYMEDYEVTVPLQSLQALGCHVDAVCPKKNAGETCPTAVHDFEGDQTYSEKSGHNFTLTANFDGISASNYDALVIPGGRAPEYLALDEEVLKIAREFMESKKPVASICHGQQILAAAGVLQGKKCTAYPAVKLNVVLAGAEWLEPDPISRCFTDGNLVTGAAWPGHPEFVSQLMTLLGIRVSF 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 901234 904092 - Bpe024954 Bpe14g00056 114365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00056 391 SUPERFAMILY Class I glutamine amidotransferase-like 201 385 IPR029062 -
Bpe14g00056 391 CDD GATase1_PfpI_1 202 385 - -
Bpe14g00056 391 Pfam DJ-1/PfpI family 201 383 IPR002818 -
Bpe14g00056 391 Pfam DJ-1/PfpI family 8 190 IPR002818 -
Bpe14g00056 391 Gene3D - 4 197 IPR029062 -
Bpe14g00056 391 Gene3D - 198 391 IPR029062 -
Bpe14g00056 391 SUPERFAMILY Class I glutamine amidotransferase-like 7 194 IPR029062 -
Bpe14g00056 391 ProSiteProfiles PfpI endopeptidase domain profile. 201 386 IPR006286 -
Bpe14g00056 391 TIGRFAM PfpI: intracellular protease, PfpI family 10 192 IPR006286 -
Bpe14g00056 391 TIGRFAM PfpI: intracellular protease, PfpI family 202 385 IPR006286 -
Bpe14g00056 391 PANTHER DJ-1 PROTEIN 18 391 IPR006286 -
Bpe14g00056 391 CDD GATase1_PfpI_1 9 192 - -
Bpe14g00056 391 ProSiteProfiles PfpI endopeptidase domain profile. 8 193 IPR006286 -
Bpe14g00056 391 PANTHER DJ-1/THIJ/PFPI FAMILY PROTEIN 18 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00056 K18881 DJ1D; D-lactate dehydratase [EC:4.2.1.130] - pvy:116124585 661.759
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004736 1 1 1 1 1 2 1 2 2 2 2 2 2 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00056 Bpe_Chr14 FPKM 14.6875 18.332605 21.547207 21.443481 16.354164 22.502794 19.807108 25.370298 26.05135 27.364624