Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00128 ATGTTGAAAACTGAAGTCGATGCTACCAATGGCGACGAAGACGGCGACCGTGCAATTACCGGAGGCCGCAATAGTTGGGGACGAGTCTGCGATACTTGTCGGTCGGCGGCGTGTACAGTCTACTGCGGAGCTGATTCGGCGTTCCTATGCTCCGATTGCGACGCTCGAATCCACGCGGCTAACCGCGTTGCCTCTCGCCACGAGCGAGTCTTTGTATGTGAGGCGTGCGAGCGAGCCCCGGCTGCCTTTATCTGCAAGGCCGACGCAGCTTCTCTGTGCATCGCCTGCGACGCTGATGTTCACTCCGCAAATCCCCTGGCTAGCCGCCATCACCGTGTCCCAATTTTACCCATCTCTGGTACCGTCCACAGCCCTCGGTCGTCCAATGTCGCAGGCCTAGTCGGGGATACTGAAGATGGTGGATATCTTGGTCAAGAAGAAAACGAGCCAATTGACGAAGAAGACGAAGAAGAGGCAGCATCATGGCTGCTATTGAACCCCGTGAAGACCAGTTCGAGCCCTAGCAACATCAACAACAACAATCAAAAGACCACTGGATTTCTGTTCGCTGGCGGAGACGACGACTATTTGGATCTGGTCGAGTTCAATTCGTGCGGAGGAAATCAATTAGCTGAAGAACAGTACGACATTCCACAGCAACAATACAACAGTGCGGCGCAGAAGAATTACGGAGGAGATAGCGTTGTTCCAGTTCAGAATGAAATCAAGGAGAAGCTCCACCATCAGAATCAAAATTTTCAGCTGGGGCTTGAATATGATGCCTCTAAGTCAGGATTCGAGTTCAACGGCTTCATTAATCACAGCGTTTCGATCTCATCGATGGACGTAGGAGTCGTGCCAGAAACAACAGCGAGCGATATCTCAATCTCCCAGCCAAGGCCAAGGCCTCAAAAGGGGACAATCGACCTTTTCTCCAGTCCTCCCGTTCAAATCGCGACCCAACTTTGTCCGGTGGACCGGGAGGCTAGGGTTCTGAGATACAGAGAGAAGAAGAAGACCAGAAAATTCGAGAAGACAATCCGATATGCGTCGAGAAAGGCGTACGCAGAGACTCGACCCCGCATAAAGGGTCGGTTTGCGAAGAGAACACACTTGGAAGTGGAAGTTGATCAGAAATTATCGATGTCGTTCATGGTGGAATCTGGATACGGCGTCGTTCCGTCGTTCTAA 1191 51.89 MLKTEVDATNGDEDGDRAITGGRNSWGRVCDTCRSAACTVYCGADSAFLCSDCDARIHAANRVASRHERVFVCEACERAPAAFICKADAASLCIACDADVHSANPLASRHHRVPILPISGTVHSPRSSNVAGLVGDTEDGGYLGQEENEPIDEEDEEEAASWLLLNPVKTSSSPSNINNNNQKTTGFLFAGGDDDYLDLVEFNSCGGNQLAEEQYDIPQQQYNSAAQKNYGGDSVVPVQNEIKEKLHHQNQNFQLGLEYDASKSGFEFNGFINHSVSISSMDVGVVPETTASDISISQPRPRPQKGTIDLFSSPPVQIATQLCPVDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTHLEVEVDQKLSMSFMVESGYGVVPSF 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1750730 1751998 + Bpe006782.1 Bpe14g00128 114437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00128 396 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 25 396 IPR045281 GO:0009909
Bpe14g00128 396 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 25 396 - -
Bpe14g00128 396 CDD Bbox1_BBX-like 29 72 - -
Bpe14g00128 396 Pfam B-box zinc finger 71 115 IPR000315 GO:0008270
Bpe14g00128 396 ProSiteProfiles CCT domain profile. 327 369 IPR010402 GO:0005515
Bpe14g00128 396 ProSiteProfiles Zinc finger B-box type profile. 25 72 IPR000315 GO:0008270
Bpe14g00128 396 Pfam CCT motif 327 369 IPR010402 GO:0005515
Bpe14g00128 396 ProSiteProfiles Zinc finger B-box type profile. 68 115 IPR000315 GO:0008270
Bpe14g00128 396 SMART bboxneu5 25 72 IPR000315 GO:0008270
Bpe14g00128 396 SMART bboxneu5 73 115 IPR000315 GO:0008270
Bpe14g00128 396 CDD Bbox1_BBX-like 72 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00128 - - - qlo:115975874 493.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00686 Bpe-Chr8:7847358 Bpe14g00128 Bpe-Chr14:1750730 2.66E-72 dispersed
Bpe13g01202 Bpe-Chr13:17372137 Bpe14g00128 Bpe-Chr14:1750730 5.70E-75 dispersed
Bpe14g00128 Bpe-Chr14:1750730 Bpe13g00423 Bpe-Chr13:11855165 1.11E-17 dispersed
Bpe15g00764 Bpe-Chr15:17989759 Bpe14g00128 Bpe-Chr14:1750730 1.67E-13 dispersed
Bpe14g00128 Bpe-Chr14:1750730 Bpe02g01272 Bpe-Chr2:16126093 9.41E-76 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00128 . 23 396 C2C2-CO-like Transcription Factor Family AT5G15850 51.5 2.2e-58 223.0
Bpe14g00128 . 25 396 C2C2-CO-like Transcription Factor Family AT3G02380 53.7 8.9e-65 244.2
Bpe02g01272 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 53.4 5.1e-63 238.4
Bpe13g01202 BCT 4 347 C2C2-CO-like Transcription Factor Family AT5G57660 54.4 1.4e-65 246.9
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 6.1e-80 294.7
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 51.5 7.5e-78 287.7
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 51.5 7.5e-78 287.7
Bpe07g00449 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 55.8 3.7e-52 202.2
Bpe15g00849 BCT 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 8.2e-52 201.1
Bpe05g00323 BCT 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 1.5e-50 196.8
Bpe13g00423 . 1 113 C2C2-CO-like Transcription Factor Family AT2G21320 80.5 1.5e-49 192.6
Bpe13g00423 . 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 81.7 7.3e-50 193.7
Bpe05g00323 BCT 1 190 C2C2-CO-like Transcription Factor Family AT4G39070 56.5 7.6e-55 210.7
Bpe07g00449 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 57.5 6.4e-54 207.6
Bpe15g00849 BCT 1 181 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 7.1e-53 204.1
Bpe05g00126 BCT,CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.9 1.8e-48 189.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009273 0 1 0 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22409 PF00643 zf-B_box 5.80E-06 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00128 Bpe_Chr14 FPKM 0.564137 0.681328 4.715237 5.2349 26.393604 19.345751 27.227459 0.417498 0.617267 0.491803