Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00138 ATGGGGAGAGGAAGAGTAGAACTCAAGAGGATAGAGAACAAGATAAACAGACAGGTGACATTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATTATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAACATGCTTAAAACCCTGGAAAGGTACCAAAAATGTAGCTATGGTGCGGTGGAAGTCAACGGACCTTGCAAGGAACTTGAGAGCAGCTACAGAGAGTACTTGAAGTTGAAATCCAGATTTGAGTCCTTACAAAGAACTCAAAGAAATCTGCTTGGGGAAGAATTGGGTCCCTTGAACTCAAAAGAGCTTGAACAGCTTGAGCGTCAGCTGGAAGCATCCTTAAAGCAAGTCAGATCCACCAAGACCCAGTTCATGCTTGATCAGCTTTCTGATCTTCAAACCAAGGAACAAATGCTGTTGGAAGCCAACAGAGCTTTGTCTATAAAGCTAGATGAAATCAGTTCAAGAAATCAGCTAAGGCCAGCTTGGGAAGGTGGGGATCAAAATATATCATATGGATCTCAAAGTGCCCAAACTCAAGGATTCTTCCAGCCTCTGGACTGCAATCCCACTTTGCAAATCGGGTAA 651 43.47 MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLERYQKCSYGAVEVNGPCKELESSYREYLKLKSRFESLQRTQRNLLGEELGPLNSKELEQLERQLEASLKQVRSTKTQFMLDQLSDLQTKEQMLLEANRALSIKLDEISSRNQLRPAWEGGDQNISYGSQSAQTQGFFQPLDCNPTLQIG 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1858128 1864672 - Bpe006792.1 Bpe14g00138 114447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00138 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe14g00138 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe14g00138 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe14g00138 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe14g00138 216 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bpe14g00138 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe14g00138 216 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe14g00138 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
Bpe14g00138 216 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bpe14g00138 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe14g00138 216 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 216 - -
Bpe14g00138 216 Coils Coil 121 144 - -
Bpe14g00138 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe14g00138 216 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Bpe14g00138 216 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00148 Bpe-Chr2:1012227 Bpe14g00138 Bpe-Chr14:1858128 2.56E-46 dispersed
Bpe05g00919 Bpe-Chr5:22171779 Bpe14g00138 Bpe-Chr14:1858128 4.32E-59 dispersed
Bpe13g00816 Bpe-Chr13:14457272 Bpe14g00138 Bpe-Chr14:1858128 9.48E-101 dispersed
Bpe14g00138 Bpe-Chr14:1858128 Bpe14g00797 Bpe-Chr14:6020677 9.50E-100 dispersed
Bpe15g00568 Bpe-Chr15:16692832 Bpe14g00138 Bpe-Chr14:1858128 1.48E-64 transposed
Bpe14g00138 Bpe-Chr14:1858128 Bpe15g00567 Bpe-Chr15:16678416 1.09E-55 wgd
Bpe14g00138 Bpe-Chr14:1858128 Bpe02g01429 Bpe-Chr2:17710173 9.60E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22411 PF01486 K-box 2.80E-27 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00138 K09264 - csv:101208204 383.259