Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00144 ATGATTATAAGTGATACTCAAGAGATCTTTCCACCAAAACAAGAAGGCAATTCTAGCTATCATCAGGGAAAATTGGATAAGCCTTCATCAAGTTCAACACCATGGTTCCAAAAGGATCCGAGAATTGTGCGAGTTCCACGGGCGTTCGGAGGGAAAGATCGACACAGCAAGGTTTGTACAATAAGAGGATTAAGAGATAGAAGAGTGAGACTTTCAGTTCCTACGGCTATTCAATTATATGATCTTCAAGATAGGCTTGGCCTGAGTCAGCCTAGCAAGGTTGTCGATTGGCTGCTTGACGCCGCAAAAGATGAAATCGATGTACTTCCTCCGCTCCCTTTTCAGCCGGGAAATATTGGAGCAAATTATCAATCCATGCTTGAACTAGCCTCTCCCGGTGTCTTTCAATCTAGTGGAGAGCACAAAATCAGCAATAATATAGAAAATTTGGAAGCTTCAAGTGTATTGATCAGACCAAGTATTTTAAGTTCAGATGTTTTATGGAGGGCTAAGTCTGATGAAGCTGCAAGGGAAGAAGAGAATGAGAGAGAGAATTGGAGAGAGGGAGTTAAAAAACATAGCAATGGCAGCGAAAAACAAGTATTTTCCGACATTCAATGTCTTCCAGGAAGCCAGATCTCAACGCAAGCAGAAGATCATCTCCATAACTTCAATTTCATGCAATTGCCTCCCGCATTTTCTCTCACGACGGGGTCTCAAATCATCATTTGTCCTCCGGCGACACAATCATATTTTTCGTCGCCATTTGAGATCGATCAAAGACAAGTGAACCATGTTCAGTTGATGAGCTCAAATTCTCAAAATCTCTTTGCGAACTCTCTTGCACCGTCTTTATATCCTACCAGTCAATCGGTGAGACCTTTCCGTTTTAGCATGGCGCCTAAGCTTTTTGCTTCTCCAGATAACAGCGATGATCAACCAAATAAGACCTGA 954 42.24 MIISDTQEIFPPKQEGNSSYHQGKLDKPSSSSTPWFQKDPRIVRVPRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAKDEIDVLPPLPFQPGNIGANYQSMLELASPGVFQSSGEHKISNNIENLEASSVLIRPSILSSDVLWRAKSDEAAREEENERENWREGVKKHSNGSEKQVFSDIQCLPGSQISTQAEDHLHNFNFMQLPPAFSLTTGSQIIICPPATQSYFSSPFEIDQRQVNHVQLMSSNSQNLFANSLAPSLYPTSQSVRPFRFSMAPKLFASPDNSDDQPNKT 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1901730 1902755 - Bpe006798.1 Bpe14g00144 114453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00144 317 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 1 316 - -
Bpe14g00144 317 MobiDBLite consensus disorder prediction 10 36 - -
Bpe14g00144 317 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Bpe14g00144 317 MobiDBLite consensus disorder prediction 1 36 - -
Bpe14g00144 317 Pfam TCP family transcription factor 51 171 IPR017887 -
Bpe14g00144 317 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 316 IPR005333 GO:0003700
Bpe14g00144 317 MobiDBLite consensus disorder prediction 174 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00144 - - - tcc:18601674 284.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00984 Bpe-Chr2:9429808 Bpe14g00144 Bpe-Chr14:1901730 4.03E-29 dispersed
Bpe08g00628 Bpe-Chr8:5465988 Bpe14g00144 Bpe-Chr14:1901730 1.31E-27 dispersed
Bpe13g00324 Bpe-Chr13:11101391 Bpe14g00144 Bpe-Chr14:1901730 2.66E-47 dispersed
Bpe14g00144 Bpe-Chr14:1901730 Bpe15g00176 Bpe-Chr15:12358051 2.72E-21 dispersed
Bpe14g00144 Bpe-Chr14:1901730 Bpe15g00574 Bpe-Chr15:16742038 4.27E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00011 . 35 261 TCP Transcription Factor Family AT5G23280 54.0 2.3e-54 209.1
Bpe15g00954 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.6e-52 203.0
Bpe08g01471 BCT 92 370 TCP Transcription Factor Family AT2G45680 50.3 1.5e-54 210.3
Bpe15g00605 BCT,CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 82.7 3.3e-41 166.4
Bpe09g00550 . 1 287 TCP Transcription Factor Family AT3G27010 53.1 7.3e-66 247.7
Bpe11g01485 . 6 257 TCP Transcription Factor Family AT3G27010 55.4 5.0e-59 224.9
Bpe15g00954 . 1 259 TCP Transcription Factor Family AT5G08330 51.6 5.9e-60 227.6
Bpe12g00011 . 1 259 TCP Transcription Factor Family AT5G08330 51.8 1.5e-58 223.0
Bpe12g00521 CCT 27 126 TCP Transcription Factor Family AT5G60970 77.2 1.9e-38 156.8
Bpe14g00144 . 29 154 TCP Transcription Factor Family AT3G02150 65.4 9.5e-38 154.5
Bpe15g00176 BCT,CCT,ECH 8 191 TCP Transcription Factor Family AT2G31070 53.8 6.4e-42 168.3
Bpe12g00269 . 14 198 TCP Transcription Factor Family AT2G31070 53.5 2.7e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22412 PF03634 TCP 1.30E-26 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00144 Bpe_Chr14 FPKM 0.70922 1.259879 4.499615 4.974262 1.414292 1.205343 1.375861 31.499468 32.10078 39.867489