Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00162 ATGACCCATAAGAGACAGCTTTGTTTTAGCTTGAGGAAGATACAAATGGAGGGACTGAGAAGGTCGCCGCCTGTAGGGGCGGCGGGTGCGGTGGTGGTGACGGTGTGTTTTTTAGGGATGATGGTGCAAGAAGTTTCAGCTACTCGGTGGATTGTTGGAAGTAACATGGGGTGGACAAACGATGTCAACTACACTGTTTGGGCTCAAGATAAGCAGTTCTACAATGGCGATTGGCTCTTTTTTGTTTACGACCGGAATCAAAAGAACGTATTGGAGGTGAACAAAACGGACTACGAGGCATGCAACTCCGATCACCCGCTTCATAATTGGACGACGGGGGCCGGGAGAGATGTGGTGCCGCTCAACGTCACAAGGGAGTACTATTTCATTAGCGGCAAAGGTTTCTGCTATGGAGGTATGAAGTTGGCCGTCCAGGTGGAGAATTTGCCTCCTCCTCCTCCTCCTCCGTCGTCATTGCCGCTGGATCAAAAGAATTCAGCTCCTCCAGCTCGAACTCATAGTCGGAGCCGCCTCATTATTCCGGTGGCATTGGCGGTCGGAGTCATTTGGAAAGCCTTTGTTTGGCTATGGTAG 594 50.84 MTHKRQLCFSLRKIQMEGLRRSPPVGAAGAVVVTVCFLGMMVQEVSATRWIVGSNMGWTNDVNYTVWAQDKQFYNGDWLFFVYDRNQKNVLEVNKTDYEACNSDHPLHNWTTGAGRDVVPLNVTREYYFISGKGFCYGGMKLAVQVENLPPPPPPPSSLPLDQKNSAPPARTHSRSRLIIPVALAVGVIWKAFVWLW 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2039975 2040713 + Bpe006816.1 Bpe14g00162 114471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00162 197 Gene3D - 46 149 IPR008972 -
Bpe14g00162 197 SUPERFAMILY Cupredoxins 47 146 IPR008972 -
Bpe14g00162 197 Pfam Plastocyanin-like domain 58 140 IPR003245 GO:0009055
Bpe14g00162 197 MobiDBLite consensus disorder prediction 149 172 - -
Bpe14g00162 197 PANTHER BLUE COPPER PROTEIN 26 188 IPR039391 GO:0009055
Bpe14g00162 197 ProSiteProfiles Phytocyanin domain profile. 48 148 IPR003245 GO:0009055
Bpe14g00162 197 PANTHER LAMIN-LIKE PROTEIN 26 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00162 - - - qsu:112009091 258.455
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01443 Bpe14g00162 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00162 Bpe-Chr14:2039975 Bpe08g01459 Bpe-Chr8:15296126 3.37E-19 dispersed
Bpe14g00162 Bpe-Chr14:2039975 Bpe14g00163 Bpe-Chr14:2042050 1.66E-27 tandem
Bpe09g00454 Bpe-Chr9:12265536 Bpe14g00162 Bpe-Chr14:2039975 1.28E-29 transposed
Bpe14g00162 Bpe-Chr14:2039975 Bpe02g01443 Bpe-Chr2:17834531 1.67E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1593 . . Bda01g01224 . Bpe02g01443 Bpe14g00162 . . . Cmo11g01201 . . Car11g00976 Car14g00951 . . . . . . . . . . Cla10g01479 Cam10g1524 Cec10g1562 Cco10g1540 Clacu10g1537 Cmu10g2301 Cre10g1684 . . . Cone16ag0481 . . . . Blo17g00375 Blo18g00400 . . . . . . . . . . . . . Cpe04g00182 . . . . . . . . . . . . . . . . Csa03g03793 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g00893 . 390 531 Phytocyanin Superfamily AT1G64640 57.2 6.0e-39 157.5
Bpe02g01264 . 12 178 Phytocyanin Superfamily AT5G25090 51.1 2.6e-39 158.7
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00162 Bpe_Chr14 FPKM 0.372563 0.325065 0.0 0.185305 87.560959 87.704414 86.803246 0.0 0.0 0.0