Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00177 ATGGAAGTAGCGCCGACTCCGATTGCCACCATTAATAGCGGGGTTAAATCTCCGGAAGCTGATTCTGAAACCCCGACTAAGATCCAACCGGTTGGAAAGCTTTCGCCTTTCAGCAATGGCGTACTCAAGCGTCACGCTTATGCGGCTTCTCCTGTTTCTTACAAAGAATGTCTGAAAAATCACGCTGCTAGCATCGGTTCTCACGCTTTGGATGGGTGTGGTGAGTTTATGCCCTCTTCTTCCGCCGCTTCTAATGACCCTTTTTCTCTCAAATGCGCCGCCTGCGGTTGTCACAGGAACTTCCACCGCCGTGAGCCGGAAGATCAGCCACTTTCTGCTGCCATTTCCACGCATGTAATCGAATATCAGCCGCACCACCGCCATCACCCGCCTCCGCCGCTACATCCGCCCTCCAACCGCAGCCCTAATTCTTCATCTCCACCGCCAATCTCCTCCTCTTACTACCCCTCAGCCCCACACATGCTTCTCGCTCTGTCGGCCGGACTGTCACCTCATCCCGAAATTGCACCGGCAATGGTCTCTCCGACGACCGCGAGAAAAAGATTCAGAACAAAATTCAGCACAGATCAGAAAGAGAAGATGCACGAGTTTGCAGAAAAACTGGGGTGGAAATTTCAGAAGAGAGACGAAGAACTGGTTCGAGAATTCTGCAGTGAAGTCGGAGTAGAGAAAGGAGTTCTCAAAGTCTGGATGCATAACAACAAGAACGCTTTTGCTAAGAAGGACGTCAATGACGAAAGGCCGATCCTGCAAAATTCCCTGAACAACGGCAACGGCAACGGCAACGGCAACGACAACTACGAGGAAAACGCGATTGATCACCACCACTCCATGGTTCAGAATCCGAATCACTATCACAACGACGGAAGGCTACATTTTGGCACTAATGGGTCGTCTTCTTCCTCTTGA 930 50.97 MEVAPTPIATINSGVKSPEADSETPTKIQPVGKLSPFSNGVLKRHAYAASPVSYKECLKNHAASIGSHALDGCGEFMPSSSAASNDPFSLKCAACGCHRNFHRREPEDQPLSAAISTHVIEYQPHHRHHPPPPLHPPSNRSPNSSSPPPISSSYYPSAPHMLLALSAGLSPHPEIAPAMVSPTTARKRFRTKFSTDQKEKMHEFAEKLGWKFQKRDEELVREFCSEVGVEKGVLKVWMHNNKNAFAKKDVNDERPILQNSLNNGNGNGNGNDNYEENAIDHHHSMVQNPNHYHNDGRLHFGTNGSSSSS 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2140419 2141348 + Bpe006832.1 Bpe14g00177 114486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00177 309 MobiDBLite consensus disorder prediction 256 274 - -
Bpe14g00177 309 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Bpe14g00177 309 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 269 - -
Bpe14g00177 309 Pfam ZF-HD protein dimerisation region 52 106 IPR006456 -
Bpe14g00177 309 SUPERFAMILY Homeodomain-like 177 247 IPR009057 -
Bpe14g00177 309 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 243 IPR006455 -
Bpe14g00177 309 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 10 269 - -
Bpe14g00177 309 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Bpe14g00177 309 MobiDBLite consensus disorder prediction 123 152 - -
Bpe14g00177 309 MobiDBLite consensus disorder prediction 256 309 - -
Bpe14g00177 309 Gene3D - 178 247 - -
Bpe14g00177 309 MobiDBLite consensus disorder prediction 10 29 - -
Bpe14g00177 309 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00177 - - - jre:108985975 337.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00081 Bpe-Chr11:544671 Bpe14g00177 Bpe-Chr14:2140419 1.67E-89 dispersed
Bpe14g00177 Bpe-Chr14:2140419 Bpe15g00427 Bpe-Chr15:15790946 1.30E-49 dispersed
Bpe11g01458 Bpe-Chr11:10824731 Bpe14g00177 Bpe-Chr14:2140419 1.79E-89 wgd
Bpe13g00443 Bpe-Chr13:11967088 Bpe14g00177 Bpe-Chr14:2140419 2.26E-49 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22414 PF04770 ZF-HD_dimer 1.40E-28 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00177 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0