Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00215 ATGCCGGAGGAGATGACGACAATTGATTACGTGATGGAGGCAGCCTCTGGTCCCCACTTTTCCGGCCTCCGATTGGACGGCCTTCGCTCATCGTCGGCCCCTTCTTTGTCCCCTTCTTCTGCTACTCATCGCGCTTCTATGGCTACTTCCTTTTCCTCGTCAGACTCGAATGCTTTCAGGCAGCCCTTCGTCATCGGAGTTTCAGGTGGTACGGCTTCGGGTAAGACCACGGTCTGTGACATGATAATCCAACAACTTCATGATCACAGAGTTGTACTTGTCAATCAGGTTTGTTTCCTTCGCTTTCTTGTGTTCGCAAAAAAAAAAAAAAAAAAAAAAAAAACCGCGACTGCTGCTTTCTGCTTTCCCAAATTTTTTACACTGTTTCCCACTGTATTTCTGACTATCCCGCAGGATTCTTTTTATCGTGGTTTAACTCCAGAGGAATCCCAGTGCGTTCAGGAATATAACTTTGATCATCCTGATGCTTTTGACACCGATCAGCTTCTGGATTGCATTCAAAAGTTAAAGAGTGGGCAATCTTACCATGTTCCAATATATGATTTCAAAAAACATCGCCGCTCATCTGATAGCTTTCGGCAGGTAAATGCATCTGATGTTATTATTCTGGAAGGAATTCTTGTTTTCCATGATCAGCGTGTCCGCAATCTAATGAATATGAAAATTTTTGTAGACACAGATGCTGATGTGAGGCTTGCACGCAGAATTAGACGCGATATTGTGGAGAGGGGAAGAGACATCAACTCTGTTCTTGAACAGTATGCGAAGTTTGTGAAACCTGCTTTTGATGATTTTATTCTGCCATCTAAGAAGTATGCTGATGTGATCATACCCCGCGGAGGGGAGAACCACGTTGCCATTGATTTGATTGTCCAACATATTCGCACAAAGCTTGGTCAGCATGACCTTTGTAAGATATATCCCAATGTTACTGTAATTCTGTCAACATTTCAGATAAGAGGCATGCATACATTAATCAGAGATCGAGACATATCAAAGCATGATTTTGTATTTTACTCTGATAGACTTATTCGTCTGGTGGTCGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTGGTTACTCCTACAGGTTCTGTATATACCGGTGTTGATTTTTGCAAGAAATTATGTGGAGTTTCAATTATTCGAAGTGGTGAAAGCATGGAAAATGCATTGCGGGCATGCTGCAAGGGAATAAAAATCGGAAAGATTCTTATTCACCGTGATGGAGACAATGGGAAGCAGCTTATATATGAAAAACTACCAAAGGATATATCAGAACGTCATGTCTTACTTCTTGACCCTGTTCTGGCTACAGGTAACTCTGCCAACCAAGCAATTGAGCTTTTAATACAAAAGGGTGTTCCAGAAGCGCACATTATATTTCTAAATCTAATATCCGCTCCCGAGGGTATTCATTGTGTTTTCAGACAATTTCCATCCTTAAAAATTGTCACTTCAGAAATAGATGCTGGATTGAACGAGGAGTTCCGTGTCATTCCCGGTCTGGGTGAGTTTGGTGATCGTTACTTTGGTACAGACGATTGA 1578 42.14 MPEEMTTIDYVMEAASGPHFSGLRLDGLRSSSAPSLSPSSATHRASMATSFSSSDSNAFRQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQVCFLRFLVFAKKKKKKKKTATAAFCFPKFFTLFPTVFLTIPQDSFYRGLTPEESQCVQEYNFDHPDAFDTDQLLDCIQKLKSGQSYHVPIYDFKKHRRSSDSFRQVNASDVIILEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDIVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGENHVAIDLIVQHIRTKLGQHDLCKIYPNVTVILSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPEAHIIFLNLISAPEGIHCVFRQFPSLKIVTSEIDAGLNEEFRVIPGLGEFGDRYFGTDD 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2387668 2396048 - Bpe006868.1 Bpe14g00215 114524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00215 525 CDD PRTases_typeI 381 483 IPR000836 -
Bpe14g00215 525 Gene3D - 59 307 IPR027417 -
Bpe14g00215 525 Pfam Phosphoribulokinase / Uridine kinase family 139 292 IPR006083 GO:0005524|GO:0016301
Bpe14g00215 525 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 105 IPR029930 GO:0004849|GO:0044206
Bpe14g00215 525 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 133 522 IPR029930 GO:0004849|GO:0044206
Bpe14g00215 525 CDD UMPK 64 304 IPR000764 -
Bpe14g00215 525 Pfam Uracil phosphoribosyltransferase 321 523 - -
Bpe14g00215 525 SUPERFAMILY PRTase-like 307 524 IPR029057 -
Bpe14g00215 525 Gene3D - 308 523 IPR029057 -
Bpe14g00215 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 297 IPR027417 -
Bpe14g00215 525 PANTHER URIDINE KINASE 16 105 - -
Bpe14g00215 525 PANTHER URIDINE KINASE 133 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00215 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - zju:107427866 815.839
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01028 Bpe-Chr3:29673035 Bpe14g00215 Bpe-Chr14:2387668 4.08E-19 dispersed
Bpe11g00307 Bpe-Chr11:2237773 Bpe14g00215 Bpe-Chr14:2387668 6.38E-14 dispersed
Bpe11g00604 Bpe-Chr11:4593402 Bpe14g00215 Bpe-Chr14:2387668 0 dispersed
Bpe11g01674 Bpe-Chr11:12988719 Bpe14g00215 Bpe-Chr14:2387668 4.46E-12 dispersed
Bpe14g00215 Bpe-Chr14:2387668 Bpe15g00559 Bpe-Chr15:16617569 9.09E-13 dispersed
Bpe14g00215 Bpe-Chr14:2387668 Bpe08g01082 Bpe-Chr8:12931670 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1191 . . . Bda13g01653 . Bpe14g00215 . . . . Cma11g01493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00584 CCT,ECH 33 188 PRT Gene Family AT1G80050 75.0 2.0e-64 241.9
Bpe07g00164 . 30 180 PRT Gene Family AT1G80050 75.5 8.6e-63 236.5
Bpe05g00590 . 30 180 PRT Gene Family AT1G80050 76.2 2.5e-62 235.0
Bpe05g00045 . 27 176 PRT Gene Family AT1G80050 69.3 2.0e-56 215.3
Bpe02g01252 CCT,ECH 33 158 PRT Gene Family AT1G80050 58.3 1.4e-44 176.0
Bpe14g00584 CCT,ECH 1 148 PRT Gene Family AT5G11160 85.1 4.6e-67 250.8
Bpe07g00164 . 8 145 PRT Gene Family AT5G11160 73.9 5.8e-54 207.2
Bpe05g00590 . 8 145 PRT Gene Family AT5G11160 72.5 3.8e-53 204.5
Bpe05g00045 . 5 142 PRT Gene Family AT5G11160 70.3 6.4e-53 203.8
Bpe02g01252 CCT,ECH 1 118 PRT Gene Family AT5G11160 62.8 8.7e-42 166.8
Bpe05g00045 . 4 179 PRT Gene Family AT1G27450 81.3 3.7e-78 287.7
Bpe07g00164 . 1 180 PRT Gene Family AT1G27450 75.0 3.8e-75 277.7
Bpe05g00590 . 7 181 PRT Gene Family AT1G27450 73.1 2.6e-71 265.0
Bpe14g00584 CCT,ECH 11 183 PRT Gene Family AT1G27450 71.7 4.1e-69 257.7
Bpe02g01252 CCT,ECH 11 153 PRT Gene Family AT1G27450 54.3 1.1e-45 179.9
Bpe05g00303 . 80 558 PRT Gene Family AT2G16570 85.0 2.2e-238 821.6
Bpe05g00303 . 80 558 PRT Gene Family AT4G34740 85.4 5.7e-239 823.5
Bpe05g00303 . 80 531 PRT Gene Family AT4G38880 75.1 2.4e-194 675.2
Bpe05g00045 . 4 179 PRT Gene Family AT1G27450 81.3 3.7e-78 287.7
Bpe07g00164 . 1 180 PRT Gene Family AT1G27450 75.0 3.8e-75 277.7
Bpe05g00590 . 7 181 PRT Gene Family AT1G27450 73.1 2.6e-71 265.0
Bpe14g00584 CCT,ECH 11 183 PRT Gene Family AT1G27450 71.7 4.1e-69 257.7
Bpe02g01252 CCT,ECH 11 153 PRT Gene Family AT1G27450 54.3 1.1e-45 179.9
Bpe14g00584 CCT,ECH 33 188 PRT Gene Family AT1G80050 75.0 2.0e-64 241.9
Bpe07g00164 . 30 180 PRT Gene Family AT1G80050 75.5 8.6e-63 236.5
Bpe05g00590 . 30 180 PRT Gene Family AT1G80050 76.2 2.5e-62 235.0
Bpe05g00045 . 27 176 PRT Gene Family AT1G80050 69.3 2.0e-56 215.3
Bpe02g01252 CCT,ECH 33 158 PRT Gene Family AT1G80050 58.3 1.4e-44 176.0
Bpe07g00164 . 1 97 PRT Gene Family AT4G22570 83.7 1.3e-43 172.2
Bpe05g00590 . 5 97 PRT Gene Family AT4G22570 81.7 5.5e-42 166.8
Bpe05g00045 . 4 94 PRT Gene Family AT4G22570 79.1 5.3e-37 150.2
Bpe07g00164 . 1 96 PRT Gene Family AT4G12440 83.3 3.3e-41 164.1
Bpe05g00590 . 1 96 PRT Gene Family AT4G12440 80.2 3.0e-39 157.5
Bpe14g00584 CCT,ECH 1 148 PRT Gene Family AT5G11160 85.1 4.6e-67 250.8
Bpe07g00164 . 8 145 PRT Gene Family AT5G11160 73.9 5.8e-54 207.2
Bpe05g00590 . 8 145 PRT Gene Family AT5G11160 72.5 3.8e-53 204.5
Bpe05g00045 . 5 142 PRT Gene Family AT5G11160 70.3 6.4e-53 203.8
Bpe02g01252 CCT,ECH 1 118 PRT Gene Family AT5G11160 62.8 8.7e-42 166.8
Bpe02g01097 . 1 186 PRT Gene Family AT1G71750 60.4 1.5e-61 232.6
Bpe11g00604 . 28 482 PRT Gene Family AT1G55810 83.1 3.7e-220 760.8
Bpe08g01082 . 739 1125 PRT Gene Family AT1G55810 83.7 8.8e-190 659.8
Bpe14g00215 . 19 525 PRT Gene Family AT1G55810 66.3 1.7e-188 655.6
Bpe11g00604 . 79 487 PRT Gene Family AT3G27440 74.1 5.5e-178 620.5
Bpe14g00215 . 81 525 PRT Gene Family AT3G27440 68.1 1.1e-170 596.3
Bpe08g01082 . 739 1125 PRT Gene Family AT3G27440 72.6 1.2e-164 576.2
Bpe14g00215 . 1 525 PRT Gene Family AT3G27190 78.5 1.4e-233 805.4
Bpe11g00604 . 14 481 PRT Gene Family AT3G27190 73.1 9.7e-203 703.0
Bpe08g01082 . 739 1125 PRT Gene Family AT3G27190 77.3 5.4e-177 617.5
Bpe03g01028 . 1 239 PRT Gene Family AT3G53900 73.3 4.2e-100 361.3
Bpe11g00604 . 13 482 PRT Gene Family AT4G26510 82.7 2.9e-228 787.7
Bpe14g00215 . 11 525 PRT Gene Family AT4G26510 69.5 1.4e-201 699.1
Bpe08g01082 . 739 1125 PRT Gene Family AT4G26510 84.2 1.3e-191 666.0
Bpe14g00215 . 1 525 PRT Gene Family AT5G40870 79.8 1.4e-238 822.0
Bpe11g00604 . 14 484 PRT Gene Family AT5G40870 73.1 1.2e-203 706.1
Bpe08g01082 . 739 1125 PRT Gene Family AT5G40870 76.7 4.6e-176 614.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00215 Bpe_Chr14 FPKM 10.219873 11.79578 11.744318 10.811915 11.729611 8.667552 11.803694 12.54679 12.61764 14.51366