Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00273 ATGAGATGTTGTATAGCATTTCAGGTTTCTCTCTTTTTCTTGGTGGTTTTAGGAGACGCTACGAGGAAAAACGAGAAGAAGGAAGCTAAAACTAGACTGGCCTTCAAAACCGAATCACAAGAAGAAAGACTAGAAGACGGTTTTAAGTGGAGGAAGTATGGGAAGAAGATGGTGAAGAACAGCCCCAATCCAAGGAACTATTACAAATGTTCAGTTGCAGGCTGCTCTGTGAAAAAAAGAGTCGAAAGAGACGGAGATGATCCGAGGTTTGTGATTACAACTTACGAGGGTGTCCATAACCATGAAAGTTCCTAG 315 41.9 MRCCIAFQVSLFFLVVLGDATRKNEKKEAKTRLAFKTESQEERLEDGFKWRKYGKKMVKNSPNPRNYYKCSVAGCSVKKRVERDGDDPRFVITTYEGVHNHESS 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2772463 2772997 - Bpe006926.1 Bpe14g00273 114582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00273 104 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 22 103 IPR044810 GO:0003700
Bpe14g00273 104 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 22 103 - -
Bpe14g00273 104 SUPERFAMILY WRKY DNA-binding domain 39 102 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe14g00273 104 SMART WRKY_cls 44 103 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe14g00273 104 Gene3D WRKY domain 31 97 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe14g00273 104 ProSiteProfiles WRKY domain profile. 39 104 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe14g00273 104 Pfam WRKY DNA -binding domain 45 102 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00273 - - - zju:107420087 145.591
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01527 Bpe-Chr13:20899597 Bpe14g00273 Bpe-Chr14:2772463 2.24E-33 dispersed
Bpe14g00273 Bpe-Chr14:2772463 Bpe12g00287 Bpe-Chr12:3371482 5.03E-32 dispersed
Bpe14g00273 Bpe-Chr14:2772463 Bpe14g01092 Bpe-Chr14:8150578 2.96E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g123 . . . . . . . . Cmo05g00435 . . Cma05g00418 . Car12g00603 Sed11g0865 Cpe07g00570 . Bhi04g01492 Tan02g1607 Cmetu03g0494 . Hepe08g1410 . Lcy13g2200 . . . . . . . . . Cone17ag0938 Cone20ag0281 . . . . . . . Bda13g01591 Bpe14g00273 . . . . . . . Cma12g00655 . Car05g00356 . . . . . . . . . Cla08g01001 Cam08g1451 Cec08g1027 Cco08g1151 Clacu08g1152 . Cre08g0937 Lsi08g00852 . Chy03g00670 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001629 2 5 0 0 2 2 3 2 2 2 2 2 3 2 2 3 2 3 4 2 2 2 2 2 1 2 2 3 5 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22421 PF03106 WRKY 7.90E-25 CL0274 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00273 Bpe_Chr14 FPKM 4.805947 7.840293 4.268112 4.467264 23.534342 16.643568 23.379261 3.968423 4.350923 2.938848