Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00287 ATGGGTGGTCGTGAAGTTGAGGTGATAAACAACAAAGGGTGTTCTAGAATTTTTGTTGGATCTTCATCTACGTTGCGTTCCTTCAGAGGTACTCAACCATTAGAGCCAATGTCTCCAGCTTCATCCTCTCTAGTGTCGGAACCGGAGAAACCTCCATCAAACGGTCCATTTACCGGACTCATTATCTGCGTTACCGGTTTGTCCAAAGAAGCACGAAAACAAGTGATGGAAGCAACTGAGAGATTGGGCGGTCAATACAGCCCCAACTTGCATCCTCACTGTACTCACTTGGTGGTCCAAATATCCTTTGAGTTATGG 318 45.91 MGGREVEVINNKGCSRIFVGSSSTLRSFRGTQPLEPMSPASSSLVSEPEKPPSNGPFTGLIICVTGLSKEARKQVMEATERLGGQYSPNLHPHCTHLVVQISFELW 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2853321 2853929 - Bpe024971 Bpe14g00287 114596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00287 106 ProSiteProfiles BRCT domain profile. 52 106 IPR001357 -
Bpe14g00287 106 MobiDBLite consensus disorder prediction 28 49 - -
Bpe14g00287 106 SUPERFAMILY BRCT domain 49 99 IPR036420 -
Bpe14g00287 106 CDD BRCT_TopBP1_rpt2_like 55 100 - -
Bpe14g00287 106 MobiDBLite consensus disorder prediction 28 56 - -
Bpe14g00287 106 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 100 - -
Bpe14g00287 106 Pfam twin BRCT domain 60 100 IPR001357 -
Bpe14g00287 106 Gene3D BRCT domain 55 104 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00287 - - - zju:107420116 157.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01569 Bpe14g00287 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00287 Bpe-Chr14:2853321 Bpe02g01569 Bpe-Chr2:18675193 3.73E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g181 . . . . Bpe02g01569 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00287 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019504 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00287 Bpe_Chr14 FPKM 0.0 0.395446 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0