Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00307 ATGGTACGAGGAAGGGTGCAGATGAAGAGGATTGAGAATCCAGTTCACAGGCAAGTTACCTTCTGCAAACGCAGAGCAGGACTGTTGAAGAAAGCTAAGGAGCTGTCTGTTCTCTGCGATGCTGATATTGGACTCTTTGTTTTCTCTCCGCATGGAAAGCTCTATGAACTTGCTACCAAAGGAACCATGCAAGAGCTTATCCAGAGATACATCGAGTTCGCAAGCCAAGATCAACCAGACCAAGCAACTCAACGCCAAACTCCAAATAATTCAAAAGAGGAGATCAATAAGCTGAAACAAGAGATCGATGTTCTTAAGAAAGGTCTTCCGTATAATTTCGAAGAAGGATCACTGACGATGAGATTCGAGAAACTGCAAGAGCTAGAGAAGCAGCTTGAAATTTGGATCTGCAATATAAGGTCTACAAAGATGGAAGTCATGTTTCAGGAGATCCAATCTTTGAGGAAAGAGGAAGGAGAACTCAGAGCTGCCAACAAGTATCTCCAAGACAAGATAGAGGGGAATATTGAACTTACTAACATCGAACCAGTGACTGCTAGTTTACTTTACCCACCATTTATACAGAATGAAATATTTCAATTTTAG 606 41.58 MVRGRVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGLFVFSPHGKLYELATKGTMQELIQRYIEFASQDQPDQATQRQTPNNSKEEINKLKQEIDVLKKGLPYNFEEGSLTMRFEKLQELEKQLEIWICNIRSTKMEVMFQEIQSLRKEEGELRAANKYLQDKIEGNIELTNIEPVTASLLYPPFIQNEIFQF 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3060186 3062490 - Bpe006958.1 Bpe14g00307 114616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00307 201 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Bpe14g00307 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bpe14g00307 201 Gene3D - 15 100 IPR036879 GO:0003677|GO:0046983
Bpe14g00307 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe14g00307 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe14g00307 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe14g00307 201 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 201 - -
Bpe14g00307 201 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Bpe14g00307 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 - -
Bpe14g00307 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe14g00307 201 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe14g00307 201 Coils Coil 125 145 - -
Bpe14g00307 201 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe14g00307 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00307 Bpe-Chr14:3060186 Bpe13g01368 Bpe-Chr13:18936151 9.00E-40 dispersed
Bpe14g00307 Bpe-Chr14:3060186 Bpe02g02307 Bpe-Chr2:23754926 3.69E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22424 PF01486 K-box 6.50E-18 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00307 - - qsu:112026153 256.144