Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00321 ATGGCACGAGTCTGTTGGCCGTATTTTGATCCTGAGTACGAGAGCATGAGCACTCGGATCAATCCTCCAAGAGTTTCTGTAGACAACACAAGTTGCAGCGATTGCACTCTTGTGAAGGTTGACAGCATGAACAAACCAGGAATTCTTCTGGAAGTGGTCCAGTTTCTGTCTGACCTTGACCTCATTATTACTAAAGCTTACATCTCCTCTGATGGCGGATGGTTCATGGACGGTGTTTTTCATGTGACTGATCAGCAAGGAAAGAAGATCATCGATGGAAAAACCATTGACTGCATAGAGAAGGCTTTAGGACCAAAGGGTCATACCAAAGATGGGGGAAAGACTTGGCCAGGGAAGAGGGTCGGAGTCCATTCAATCGGCGATCACACTGCGATCGAACTAACTGGTAGAGATCGCCCGGGTCTCTTATCAGAAATATCAGCCATCCTTACCAACCTTCATTTCAATGTAGTCGCCGCAGAAGTTTGGACACACAATAGGCGTATAGCATGCGTACTTTATGTCAACGATGATGCCACATGTAGGGCCGTCAACGATCCGATCAGATTATCGATAATGGAGGAGCAGCTGAAAAACGTCCTCCGTGTATGTGAGGACGACGAGAATGTGGCCCACACCAGCTTCTCCGTGGGGCTAACTCATGTTGATCGACGGCTCCATCAGATGTTATTTGCTGATCGGGATTATGAAGGTGGTTTAGTGAGTGAGATGGACTATCCTCCTTCGATTAGACCGAAGATAACGATTGAGCATTGCGAAGAAAAAGGATATTCGGTTGTTAGTGTTCGATGCAAAGACAGAGCAAAATTGTTGTTTGACATTGTCTGCACCTTGACGGATATGCAATATGTAGTTTTTCATGCTTTGATCTCATCGGATGGTCCCAACGCTTCACAAGAGTACTATATTCGCCATATGGATGGTTGCACCCTCGATACTCAAGGAGAGAAGGAAAGGGTTGTCAAATGTCTTGAAGCCGCAATTCGAAGAAGGGTTAGTGAGGGGGTCAGCTTGGAGCTATGTGCCAAGGATCGAGTAGGTTTGCTATCACAAGTAACAAGAATACTAAGAGAGAACGGATTAACAGTCACAAGAGCCGGCGTCTCTACGGTGGGGGAGCAGGCGATGAACGTATTCTACGTCCGGGATGCATCCGGTAATCCAGTGGACATGAAAACAGTGGAAGCGCTTCGCAAGGAAATAGGACACACAATGATGTTGAATGTGAAAAAAGTGCCTCAAAGTGCCAAGCCTGCAGAGGCTAATTCCAATAATGGATGGGCCAAAACCAGTTTCTTCTTTGGAAACTTACTGGAAAGGTTTTTGGCTTGA 1353 46.27 MARVCWPYFDPEYESMSTRINPPRVSVDNTSCSDCTLVKVDSMNKPGILLEVVQFLSDLDLIITKAYISSDGGWFMDGVFHVTDQQGKKIIDGKTIDCIEKALGPKGHTKDGGKTWPGKRVGVHSIGDHTAIELTGRDRPGLLSEISAILTNLHFNVVAAEVWTHNRRIACVLYVNDDATCRAVNDPIRLSIMEEQLKNVLRVCEDDENVAHTSFSVGLTHVDRRLHQMLFADRDYEGGLVSEMDYPPSIRPKITIEHCEEKGYSVVSVRCKDRAKLLFDIVCTLTDMQYVVFHALISSDGPNASQEYYIRHMDGCTLDTQGEKERVVKCLEAAIRRRVSEGVSLELCAKDRVGLLSQVTRILRENGLTVTRAGVSTVGEQAMNVFYVRDASGNPVDMKTVEALRKEIGHTMMLNVKKVPQSAKPAEANSNNGWAKTSFFFGNLLERFLA 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3146113 3148894 + Bpe006973.1 Bpe14g00321 114630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00321 450 Pfam ACT domain 131 201 IPR002912 -
Bpe14g00321 450 Pfam ACT domain 344 404 IPR002912 -
Bpe14g00321 450 CDD ACT_ACR_1 35 107 - -
Bpe14g00321 450 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 4 449 IPR040217 -
Bpe14g00321 450 SUPERFAMILY ACT-like 340 409 IPR045865 -
Bpe14g00321 450 CDD ACT_ACR_2 130 202 - -
Bpe14g00321 450 Gene3D - 129 212 - -
Bpe14g00321 450 CDD ACT_ACR_4 342 413 - -
Bpe14g00321 450 ProSiteProfiles ACT domain profile. 131 212 IPR002912 -
Bpe14g00321 450 ProSiteProfiles ACT domain profile. 344 421 IPR002912 -
Bpe14g00321 450 CDD ACT_ACR_3 264 338 - -
Bpe14g00321 450 Gene3D - 339 420 - -
Bpe14g00321 450 SUPERFAMILY ACT-like 32 107 IPR045865 -
Bpe14g00321 450 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR3 4 449 - -
Bpe14g00321 450 SUPERFAMILY ACT-like 126 205 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00321 - - - vvi:100250578 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00062 Bpe-Chr4:510435 Bpe14g00321 Bpe-Chr14:3146113 1.51E-147 dispersed
Bpe10g00011 Bpe-Chr10:224402 Bpe14g00321 Bpe-Chr14:3146113 9.76E-129 dispersed
Bpe11g01666 Bpe-Chr11:12840163 Bpe14g00321 Bpe-Chr14:3146113 7.71E-150 dispersed
Bpe14g00321 Bpe-Chr14:3146113 Bpe10g00911 Bpe-Chr10:14766742 4.96E-154 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0807 Cone20ag0412 . Csa03g04320 Chy04g00380 . Blo17g00230 . . Bda13g01544 . Bpe14g00321 . Bma02g00288 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016218 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00321 Bpe_Chr14 FPKM 7.065972 4.883626 4.411084 8.879709 14.841111 17.781122 12.076863 0.077843 0.420253 0.0