Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00335 ATGGAAACCCGACTCGCTGCCTCTCTCGGCCTTTCTTCTCCTAATCCACATCACTCCCTTCCCGTTGCTGCTTTCACCTCCATTTTCACCCATTTCAACACCTTCTTTCCTTCTCCAAATCGTAGTCTCGTTGCTGCTGGTTCGAAGAGGCTCTCTTTCGGTTCTGTATCGTTATCATCTGAAGCTCAGATTTCAACATCCGAATCCTCTAACTGGATCGAACCCTCCTCTAGAAACAGCTCAAAAGTCCTCTCCTTATCAGTCTTGGAACGCGCCTTTGTCGGCGCCGCTGCCGGTGGAGTTGCCGGTGCTTTCACCCATGTCTGTTTGCACCCTCTCGATACCGTAAAGACGAAGCTTCAGACAAAGGGGGCGGCTGAAATTTATAAGAACACATTCGACGCCATTGCCAAAACCTTCAAATCCAAAGGCATATTCGGATTTTACAGTGGCATCTCAGCAGTAATCGTTGGCTCTACTGCCTCGTCGGCTGTTTATTTCGGGACATGCGAGTTCGGGCAATCAATTTTATCGCAATTCGACAGCTACCCATCGTTTCTAATCCCTCCGACAGCCGGGGCGATGGGAAACATCTTCTCGTCGGCGATTATGGTGCCGAAAGAGTTGATCACACAGCGAATGCAAACGGGAGCTAAAGGCAAGTCATGGGAAGTTTTGTTAAAGATTCTGGAGAAAGACGGCGTTCTGGGATTATACGCGGGATATTCTGCGACATTGCTGAGGAATTTACCTGCCGGAGTATTGAACTACTCGTCGTTCGAATACCTAAAAGCTGCCGTTTTGAGCAGGACGAAGCAGAACCAGTTAGACCCCTTCCAGAGCGTCTGCTGCGGCGCACTGGCCGGCGCGATAGCTGCTTCTCTCACGACTCCTCTTGATGTTGTCAAGACTCGGTTAATGACTCAGGTTCATGGGGAGGCCATGAATAAGCTATCTGCGGCGACGTACAGTGGGGTTTCGGCTACTCTCCGGCGAATACTGATGGAAGAAGGGTTGGCTGGATTTGTCCATGGAATGGGTCCTCGAGTTCTTCATGGCTCCTGTTTCTCTGCGTTGGGTTTTCTCGCGTTCGAGACTGCCAGAGTTACAATTCTGCACCATCATCGCAAGCGAAAGGAGTTAGCTCTCGCCTGA 1155 50.48 METRLAASLGLSSPNPHHSLPVAAFTSIFTHFNTFFPSPNRSLVAAGSKRLSFGSVSLSSEAQISTSESSNWIEPSSRNSSKVLSLSVLERAFVGAAAGGVAGAFTHVCLHPLDTVKTKLQTKGAAEIYKNTFDAIAKTFKSKGIFGFYSGISAVIVGSTASSAVYFGTCEFGQSILSQFDSYPSFLIPPTAGAMGNIFSSAIMVPKELITQRMQTGAKGKSWEVLLKILEKDGVLGLYAGYSATLLRNLPAGVLNYSSFEYLKAAVLSRTKQNQLDPFQSVCCGALAGAIAASLTTPLDVVKTRLMTQVHGEAMNKLSAATYSGVSATLRRILMEEGLAGFVHGMGPRVLHGSCFSALGFLAFETARVTILHHHRKRKELALA 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3244967 3246121 - Bpe006988.1 Bpe14g00335 114644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00335 384 Pfam Mitochondrial carrier protein 94 177 IPR018108 -
Bpe14g00335 384 Pfam Mitochondrial carrier protein 191 267 IPR018108 -
Bpe14g00335 384 Pfam Mitochondrial carrier protein 275 372 IPR018108 -
Bpe14g00335 384 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 19 375 - -
Bpe14g00335 384 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 19 375 - -
Bpe14g00335 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 184 266 IPR018108 -
Bpe14g00335 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 276 370 IPR018108 -
Bpe14g00335 384 PRINTS Mitochondrial carrier protein signature 285 307 IPR002067 GO:0055085
Bpe14g00335 384 PRINTS Mitochondrial carrier protein signature 108 122 IPR002067 GO:0055085
Bpe14g00335 384 PRINTS Mitochondrial carrier protein signature 95 108 IPR002067 GO:0055085
Bpe14g00335 384 Gene3D Mitochondrial carrier domain 40 219 IPR023395 -
Bpe14g00335 384 Gene3D Mitochondrial carrier domain 220 383 IPR023395 -
Bpe14g00335 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 90 176 IPR018108 -
Bpe14g00335 384 SUPERFAMILY Mitochondrial carrier 93 365 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00335 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - csin:114257536 506.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01604 Bpe14g00335 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00335 Bpe-Chr14:3244967 Bpe15g01071 Bpe-Chr15:19953916 5.00E-25 dispersed
Bpe07g00758 Bpe-Chr7:14093954 Bpe14g00335 Bpe-Chr14:3244967 4.14E-36 transposed
Bpe11g01176 Bpe-Chr11:8717744 Bpe14g00335 Bpe-Chr14:3244967 1.20E-29 transposed
Bpe13g00001 Bpe-Chr13:1252 Bpe14g00335 Bpe-Chr14:3244967 1.33E-06 transposed
Bpe14g00335 Bpe-Chr14:3244967 Bpe02g01604 Bpe-Chr2:18925594 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00335 Bpe_Chr14 FPKM 2.206876 2.415304 0.299313 0.488871 3.644405 2.902988 3.479318 1.800931 2.503132 1.751721