Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00336 CTTATACAGGCTTTAATAGCTTTGAAGAAAGGTGCTCAATTGCTTAAATATGGTCGTAAAGGAAAGCCTAAGTTCTGTTCATTCAGACTCTCTAGCGATGAATCTTCTTTGATTTGGATATCAAGTAGGGGTGAAAGAAGCTTGAAACTAGCTTCCATCTCTCGAATCATTCCTGGACAAAGAACTGCTGTCTTTGAACGATATTTGCGTCCTGAAAAAGATTACTTGTCTTTCTCTCTTATCTACAATAACGGCAAACGTTCTCTTGATCTGATTTGCAAAGATAAAGTTGAGGCAGAGGTTTGGATTGCGTGCCTTAAAGCATTAATAGCATCTGGTAAAGGTGGTCGTTCAAAAATTGATGGATGGAATGATGGTGGCCTCTATCTCGATGACAGCAGTGATTTGACTTCAAATAGCCAGAGCGACAGTTCCAACTGTGCAAGTAGAGATCTTTGTTCATCTGAGTTTTCTTCAAATCTTAACCAGAATATATCTCCAAAGAGGTTTTGGCCTGATAACTCTGGACAGTCAGAAAGGTTAAATGTAACATTAAACCACTCTAACATGCAAGTAAAAGGATCTGGTTCAGATGCTCTTCGAGTTAGTGTTTCAAGTGCCCCCAGCACCTCAAGTCACGGTTCTACGACTGATGATTACGATGCTCTGGGTGATGTATACATATGGGGTGAAGTTATTGGTGATAATGTGGTCAAGGTTGGAGCTGACAAAAGTACTAACTGTGTGACCTTAAGAACAGATGTGCTTCTGCCCAAGCCACTAGAGTCCAATGTAGCATTGGACGTTCAACATATATCCTGTGGGGTTATGCATTCTGCTCTAGTCACAAGGCAAGGTGAAGTCTTTACGTGGGGAGAGGAATCTGGAGGGAGGCTTGGCCATGGTGTCGGGAAAAATGTTATTCGGCCTTGTACTGTTGAATCATTAGCAGCCACTAGTGTTGATTTTGTTTCTTGTGGGGAGTTCCATACTTGTGCTGTTACAATGGCTGGGGAACTTTATACCTGGGGAGATGGCACACATTATGCTGGCCTTCTTGGTCATGGCAGTGATGTTAGCCATTGGATACCAAAGAGGGTTGCAGGTGTGCTTGAAGGGCTTCAAATTGCCTCAGTGACTTGCGGACCTTGGCATACAGCCTTGATAACATCAATGGGACAGCTCTTTACATTTGGCGTTGGAACATTTGGTGTATTGGGTCATGGAGACAGGGAAAGTGTTTCATACCCTAGAGAAGTAGAATCATTATCAGGCTTAAGGACAATTGCCGTTGCATGCGGGGTATGGCATACTGCTGCCGTTGTCGAAGTTATTGTGACACAATCTAGTTCCAGCGTTTCATCAGGGAAGTTATTTACTTGGGGCGATGGAGATAAGAACCGCCTGGGGCAAGGAGATAAAGATCCCCGGCTTAAACCAACTTGTGTACCTTCATTAATCGATTATAATTTTCACAAAATTTCTTGTGGCCACAGTTTAACCGTCGGCTTAACCACATCTGGACAAGTTTTCACTATGGGGAGTCCTGTTTACGGTCAGCTCGGGAATCCAAGCGCTGATGGGAAGCTACCATGCTTGGTAGAAGATAGGCTTGCAGGAGAATCCATCGAAGAAGTTGCATGCGGTGCATATCATGTTGCGGTACTAACTTGTAGAAATGAAGTTTATACGTGGGGAAAGGGTGCGAATGGAAGATTGGGTCATGGAGATGTTGAAGATCGAAAAAAGCCCACTTTGGTTGAATGTTTGAAAGATAGACATGTCAAATATATTTCTTGTGGTTCTAACTATATGGCTGCCATTTGTCTTCATAAATGGACTTCAAGTGCTGAGCAGTCGCAGTGTTCTGCTTGTAGACAGACATTTGGATTTACTCGAAAAAGGCACAACTGCTATAATTGTGGGTTTGTGCACTGCCATTCATGCAGTTCCAGAAGAGCATTAAGAGCTGCACTGGCTCCTAATCCTGCTAAACCATATCGCGTATGTGACTCTTGTTATTCAAAATTGAATAATGTGTTTGAAGTTAGTAATAATAGTAGGAAAAATGCAATACCTCGCCTTTCGGGTGCGAACAAGGATAGATTAGAGAAGAATGAGCTTAAGGTGGCTGATTCTATGCCTTCCAATTTGGATTTAATAAAGCAATTGGATAGCAAAGCAGCCAAACTAGGAAGGAAGCCAGATACATACTCCATCGTTCGCTCCTCTCAAGGACCTTTCTTGGTACAGCATAAAGATGTAGTTTTACCAATGGCTGTTGATTTGCGACGAATGCCTCCCAAGCCTATTCTTACGGCCCATGGAGTAAATAGGTCTGTGTCACCCCTCTCAAAGAGAAGTCCTCCTCGATCGGCCACTCCTGTTCCTACAGCATCTGGACTTTCTTTCTCCAAAAGTATTTCTGATAGCTTGAAGAGAACCAATGAACTTTTGAATCACGAAGTGTCAAGGTTACGAGCACAGGTGGAGAGCCTGAGCCAGAGATATGAGCTCCAGGAACTAGAGCTTCAAAGATCGATGAAAAAGGCACAAGAAGCACAAGCTTTAATGGTTGATGAATCTACTAAATCTAAAGCTGCAAAAGAAGTCATTAAATCACTTACAACTCAGCTTAAGGATATGGCAGAGAGGTTACCTGCTGGAGTTGACCAAACTGAGGACGTGAGGCTGGTACATCCTCCCAACGGTTTGGAACAAAATGGTATCCACTATTTAGAAACAAATGGAAAGTGCTATTCAAGAACCGATTCCACTAGCAGCTTCGCGTTGGATTCTTCCTCAGCCATAGACACTGACGCATGGCAAGGAAGTGAAGGCTTAGCCACTTCACCAAGAGATAGCAGTGACATCAATCTTGAACAAGAGCAAAAGCTGCTGCCCTCCAATGGGAGTGAGGGTCGTAAAGATTCTAGATTGCCAGATGGAAGTAGCATACAAGAGGAACTTGATGGTCACTCTCAACCCACCAGCAATAATGAGAATAGTTTGAAATCCAGGAATTCTACTTTGATTATAAATGGTAGTCAAGTTGAGGCAGAATGGATTGAACAATTCGAACCTGGTGTGTACATTACTCTCGTTGCGTTGCAAGATGGAGCGAGAGACATTAAACGAGTGCGCTTCAGCCGAAGACGATTTGAGGAGTGTCAAGCTGAGAATTGGTGGGCCGAAAACCGGGAGAGGGTGTACGAGAAATACAGCATTTGTGGGGCCAACAAGTCTTCAATTTCGAGTCAAGCCTGTGGGAGATCAGAGGGTGGAGCAGTCTCACCCTCTTCCCTACAACATTAG 3315 43.56 LIQALIALKKGAQLLKYGRKGKPKFCSFRLSSDESSLIWISSRGERSLKLASISRIIPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIACLKALIASGKGGRSKIDGWNDGGLYLDDSSDLTSNSQSDSSNCASRDLCSSEFSSNLNQNISPKRFWPDNSGQSERLNVTLNHSNMQVKGSGSDALRVSVSSAPSTSSHGSTTDDYDALGDVYIWGEVIGDNVVKVGADKSTNCVTLRTDVLLPKPLESNVALDVQHISCGVMHSALVTRQGEVFTWGEESGGRLGHGVGKNVIRPCTVESLAATSVDFVSCGEFHTCAVTMAGELYTWGDGTHYAGLLGHGSDVSHWIPKRVAGVLEGLQIASVTCGPWHTALITSMGQLFTFGVGTFGVLGHGDRESVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSVSSGKLFTWGDGDKNRLGQGDKDPRLKPTCVPSLIDYNFHKISCGHSLTVGLTTSGQVFTMGSPVYGQLGNPSADGKLPCLVEDRLAGESIEEVACGAYHVAVLTCRNEVYTWGKGANGRLGHGDVEDRKKPTLVECLKDRHVKYISCGSNYMAAICLHKWTSSAEQSQCSACRQTFGFTRKRHNCYNCGFVHCHSCSSRRALRAALAPNPAKPYRVCDSCYSKLNNVFEVSNNSRKNAIPRLSGANKDRLEKNELKVADSMPSNLDLIKQLDSKAAKLGRKPDTYSIVRSSQGPFLVQHKDVVLPMAVDLRRMPPKPILTAHGVNRSVSPLSKRSPPRSATPVPTASGLSFSKSISDSLKRTNELLNHEVSRLRAQVESLSQRYELQELELQRSMKKAQEAQALMVDESTKSKAAKEVIKSLTTQLKDMAERLPAGVDQTEDVRLVHPPNGLEQNGIHYLETNGKCYSRTDSTSSFALDSSSAIDTDAWQGSEGLATSPRDSSDINLEQEQKLLPSNGSEGRKDSRLPDGSSIQEELDGHSQPTSNNENSLKSRNSTLIINGSQVEAEWIEQFEPGVYITLVALQDGARDIKRVRFSRRRFEECQAENWWAENRERVYEKYSICGANKSSISSQACGRSEGGAVSPSSLQH 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3247589 3252302 + Bpe006989.1 Bpe14g00336 114645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00336 1104 MobiDBLite consensus disorder prediction 988 1006 - -
Bpe14g00336 1104 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 7 1082 - -
Bpe14g00336 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 272 282 IPR000408 -
Bpe14g00336 1104 SMART fyve_4 610 679 IPR000306 GO:0046872
Bpe14g00336 1104 ProSiteProfiles BRX domain profile. 1020 1075 IPR013591 -
Bpe14g00336 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 392 IPR000408 -
Bpe14g00336 1104 Gene3D - 183 446 IPR009091 -
Bpe14g00336 1104 Gene3D - 447 624 IPR009091 -
Bpe14g00336 1104 MobiDBLite consensus disorder prediction 970 986 - -
Bpe14g00336 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 560 611 IPR000408 -
Bpe14g00336 1104 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 7 1082 - -
Bpe14g00336 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 456 507 IPR000408 -
Bpe14g00336 1104 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Bpe14g00336 1104 PRINTS Chromosome condensation regulator RCC1 signature 555 576 IPR000408 -
Bpe14g00336 1104 PRINTS Chromosome condensation regulator RCC1 signature 497 515 IPR000408 -
Bpe14g00336 1104 PRINTS Chromosome condensation regulator RCC1 signature 269 282 IPR000408 -
Bpe14g00336 1104 PRINTS Chromosome condensation regulator RCC1 signature 395 409 IPR000408 -
Bpe14g00336 1104 PRINTS Chromosome condensation regulator RCC1 signature 288 304 IPR000408 -
Bpe14g00336 1104 PRINTS Chromosome condensation regulator RCC1 signature 338 354 IPR000408 -
Bpe14g00336 1104 SUPERFAMILY PH domain-like 3 110 - -
Bpe14g00336 1104 Pfam Transcription factor BRX N-terminal domain 860 894 IPR027988 -
Bpe14g00336 1104 MobiDBLite consensus disorder prediction 778 804 - -
Bpe14g00336 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 508 559 IPR000408 -
Bpe14g00336 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 561 608 IPR000408 -
Bpe14g00336 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 393 441 IPR000408 -
Bpe14g00336 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 455 502 IPR000408 -
Bpe14g00336 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 286 334 IPR000408 -
Bpe14g00336 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 338 389 IPR000408 -
Bpe14g00336 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 507 556 IPR000408 -
Bpe14g00336 1104 MobiDBLite consensus disorder prediction 965 1006 - -
Bpe14g00336 1104 SUPERFAMILY RCC1/BLIP-II 223 613 IPR009091 -
Bpe14g00336 1104 SUPERFAMILY FYVE/PHD zinc finger 612 687 IPR011011 -
Bpe14g00336 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 286 337 IPR000408 -
Bpe14g00336 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 379 389 IPR000408 -
Bpe14g00336 1104 Pfam Transcription factor regulating root and shoot growth via Pin3 1019 1074 IPR013591 -
Bpe14g00336 1104 Coils Coil 809 857 - -
Bpe14g00336 1104 MobiDBLite consensus disorder prediction 771 804 - -
Bpe14g00336 1104 Pfam FYVE zinc finger 612 678 IPR000306 GO:0046872
Bpe14g00336 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 431 441 IPR000408 -
Bpe14g00336 1104 CDD PH_PLC_plant-like 1 111 - -
Bpe14g00336 1104 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 616 678 IPR017455 -
Bpe14g00336 1104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 684 IPR013083 -
Bpe14g00336 1104 MobiDBLite consensus disorder prediction 193 217 - -
Bpe14g00336 1104 MobiDBLite consensus disorder prediction 1085 1104 - -
Bpe14g00336 1104 Gene3D - 2 116 IPR011993 -
Bpe14g00336 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 393 444 IPR000408 -
Bpe14g00336 1104 Coils Coil 865 885 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00336 - - - zju:107435717 1558.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00609 Bpe14g00336 CCT
Bpe04g00023 Bpe14g00336 CCT
Bpe02g01605 Bpe14g00336 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00023 Bpe-Chr4:222995 Bpe14g00336 Bpe-Chr14:3247589 7.10E-09 dispersed
Bpe11g00389 Bpe-Chr11:2965213 Bpe14g00336 Bpe-Chr14:3247589 0 dispersed
Bpe13g01417 Bpe-Chr13:19418907 Bpe14g00336 Bpe-Chr14:3247589 9.69E-14 dispersed
Bpe02g01346 Bpe-Chr2:17098921 Bpe14g00336 Bpe-Chr14:3247589 0 transposed
Bpe08g01197 Bpe-Chr8:13664288 Bpe14g00336 Bpe-Chr14:3247589 0 transposed
Bpe11g00936 Bpe-Chr11:6922551 Bpe14g00336 Bpe-Chr14:3247589 0 transposed
Bpe14g00336 Bpe-Chr14:3247589 Bpe02g01605 Bpe-Chr2:18929340 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00336 Bpe_Chr14 FPKM 5.335386 4.846188 2.949669 2.484935 11.376965 0.0 8.143707 1.702498 1.511769 2.222489