Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00372 ATGGAGAGGGAGGCTAATCTTCTGGTCCCTTCTGCAATTCCGAAGAACTTCAACTGCTCGGTCAACCCAGATACCTCATCTTCTTTCTCTTCCTCCCAGCCGGAGTTCCTCCACCATGTTCAAGCTGCCTTCAAGCGCCATCGTCCTCTCCGTAAGTGCTTTCTTCAACTTGCAGGTACAATGCTGCCGACTAGTGTAAGGCCTAGGCGCTTGTTGGTGCCCCAGAATGAGATATCAAAGAGTTCCGCTTCCCACTGTGGGATCGAAGTGGCTGTGAAGAAGCCCCAACCAAATATTTCAATAAATCATGGTCATCCAGTTAAGAATTTGACTGTTCAAATTAAGAGCACAATGCCCATTGTTGGGGAAACTCAAGAAGATGAATCAATAACACCACCATCTATGGTTGAGATCTTTACTGAAGGCTTTGATGAAAGACTCGATCCGTATGTTGCACAGAGAGATGAATCAGAACGAGCTTCTAGTTGTCTAGATAAGACCTCAATTTCCTCATTACATGTAGGATCTCAGCAGGTTAAGGGACAGAAAATGCTTCACTTTTCATCTGGGCATAATAATACTTCTCAGGAAATGGAGTGGATAACAAGCAGCAACCAAGGCGGGGCATCTGTTATAATTAATGAAGACGAATCAAATAAGCAAAAGTTTCGGGATGCAGAATCTGACGTAAAGTTGAGATTCAATGGTGGGATTTCTTCAATGTCTCAGAGGTTGCCAAGTGCAAAAGATGCTTTGCGTACTTTTCAAAACTTTCTGAATCAGCCTCTTACACAATCTTCAGCAGGGGGGACATCTAGTGTTACTACAACATCTGTCAACTCTACTTCTGCACCTATGCAAAATTCAACGACTTTCTGTCCTCATTCATGTCGAGATGTCGGTACTCTTGCGACCTTCGAATCTTTGGGAAGCTTGAAAGTGAATGCTCATTGTGCGAATTCTTCTCATAAAGAAATATGTGGAGTTGTGACAAATAAGACTTCTCCTGCAGTCCTAGTTCATGATTCCGCTATTAGCGCTAAAACAGAAATGATGCAATGCATTAATGGCAATGAGAGGAAAATAACTCTACCCCAGGAAAGTAGTATTTCAAAATGTTCTTCTCTACTTGATAATAAGTTGACAGAAATGGAAGAATTGGTTGATGGAGGAGGTAGCATGCAATCACAGTTGAATTCGTGCAAAAACATAGCTTCAAGTGTGAAGTTTGATTCTTCTAGATCAGGAAAGCAAGAAAAGGTTGATAGTACTAAAACAGCCCCGCGGAAAAGAAATTATGATCCTGACTTGTTCTTTAAAGTCAATGGAAAGCTTTATCAAAGGCTTGGCAAGATAGGAAGCGGAGGAAGCAGTGAGGTCCACAAAGTCATTTCATCAGACTGCACAATCTATGCATTAAAAAAGATTCGGCTCAAAGGTCGAGATTATGCTACTGCATATGGATTTTGTCAGGAGATTGTGTATTTAAACAAGTTGAAAGGGAAGAACAATATTATACACTTAATAGATTACGAGGTGACAGATAGGACTTTGCTGGAGGAAGTCATGAATGGCTCCACTAGTAATAAAGACGCCAAGGTCAAGGATGATGGATATATTTACATGGTACTTGAATATGGTGAAATTGATTTGGCACACATGCTGTCCCAAAAATGGAAGGAAATAGATAGATCCTCATCCAATCATACAATTGAGGAGAACTGGCTTCGATTCTATTGGCAGCAAATTCTACAAGCAGTAAACACTATACATGAGGAGCGAATTGTTCACTCGGATCTGAAGCCAGCCAATTTTCTTCTTGTCAAAGGCTCCTTAAAGCTTATTGATTTTGGTATTGCAAAAGCTATTATGAGTGATACAACAAACATCCAAAGGGATGCACAGGTGGGGACATTGAGTTACATGTCACCTGAGGCATTCATGTGCAACGAGAGAGATGCAAATGGAAACACCATCAAGTGTGGTCGGCCGTCCGATATATGGTCTCTTGGCTGCATTCTTTATCAGATGGTTTATGGAAGAACACCATTCGCAGAGTACAAGACTTTTTGGACAAAGTTCAAAGTTATAACTGATCCAACGCACGAGATTAAATACGAAGCACTTTCTAATCCTTGGCTTCTTGATCTTATGAAAAAGTGTCTTGCATGGGACCGCCATGAAAGGTGGAGAATTCCTCAGCTTCTTCAACACCCTTTTCTCATGCCGCCAGTTCTGCCCCAGATACCTCTTTCCCATGATTATATCTCGACATTGTTTCGATATATTGCCAAAACTTGTAAAAATGAGGAGGAAGCTTTAAGTCTTTGCCCTCAGCTCCAAAAACTCAGGTAG 2355 41.36 MEREANLLVPSAIPKNFNCSVNPDTSSSFSSSQPEFLHHVQAAFKRHRPLRKCFLQLAGTMLPTSVRPRRLLVPQNEISKSSASHCGIEVAVKKPQPNISINHGHPVKNLTVQIKSTMPIVGETQEDESITPPSMVEIFTEGFDERLDPYVAQRDESERASSCLDKTSISSLHVGSQQVKGQKMLHFSSGHNNTSQEMEWITSSNQGGASVIINEDESNKQKFRDAESDVKLRFNGGISSMSQRLPSAKDALRTFQNFLNQPLTQSSAGGTSSVTTTSVNSTSAPMQNSTTFCPHSCRDVGTLATFESLGSLKVNAHCANSSHKEICGVVTNKTSPAVLVHDSAISAKTEMMQCINGNERKITLPQESSISKCSSLLDNKLTEMEELVDGGGSMQSQLNSCKNIASSVKFDSSRSGKQEKVDSTKTAPRKRNYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIRLKGRDYATAYGFCQEIVYLNKLKGKNNIIHLIDYEVTDRTLLEEVMNGSTSNKDAKVKDDGYIYMVLEYGEIDLAHMLSQKWKEIDRSSSNHTIEENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDAQVGTLSYMSPEAFMCNERDANGNTIKCGRPSDIWSLGCILYQMVYGRTPFAEYKTFWTKFKVITDPTHEIKYEALSNPWLLDLMKKCLAWDRHERWRIPQLLQHPFLMPPVLPQIPLSHDYISTLFRYIAKTCKNEEEALSLCPQLQKLR 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3528628 3532965 - Bpe007027.1 Bpe14g00372 114681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00372 784 MobiDBLite consensus disorder prediction 409 429 - -
Bpe14g00372 784 Gene3D Transferase(Phosphotransferase) domain 1 563 744 - -
Bpe14g00372 784 SMART serkin_6 446 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe14g00372 784 PANTHER MIXED LINEAGE PROTEIN KINASE 24 783 - -
Bpe14g00372 784 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 24 783 IPR027084 GO:0004712|GO:0007093|GO:0051304
Bpe14g00372 784 CDD PKc_Mps1 444 741 - -
Bpe14g00372 784 SUPERFAMILY Protein kinase-like (PK-like) 439 752 IPR011009 -
Bpe14g00372 784 Pfam Protein kinase domain 446 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe14g00372 784 Gene3D Phosphorylase Kinase; domain 1 439 526 - -
Bpe14g00372 784 MobiDBLite consensus disorder prediction 263 288 - -
Bpe14g00372 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Bpe14g00372 784 ProSiteProfiles Protein kinase domain profile. 446 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe14g00372 784 MobiDBLite consensus disorder prediction 413 429 - -
Bpe14g00372 784 ProSitePatterns Protein kinases ATP-binding region signature. 452 474 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00372 K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1] - jre:109013664 879.782
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00476 Bpe14g00372 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00372 Bpe-Chr14:3528628 Bpe12g00747 Bpe-Chr12:12984004 6.61E-26 dispersed
Bpe14g00372 Bpe-Chr14:3528628 Bpe04g00476 Bpe-Chr4:3007360 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63712 PF00069 Pkinase 6.20E-55 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00372 Bpe_Chr14 FPKM 34.846329 38.712452 12.788416 13.624194 12.249975 13.234054 13.483248 6.039348 6.048466 5.471436