Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00388 ATGACCGAAGTAGTCTCTTTAATGGACGTCGATAACGATGACCACAATCGTTCTCTCAAACTTAGCAGCAAGGGCAAAAATGTTGTCGTTTCGGGCACTCCCCCCGATGGCAAAGCCACACCCTGGGTTGAGAAGTACCGCCCTCAGTCTCTTGCAGACGTTGCTGCCCATCGAGATATCGTCGATACCATTGATAGGCTTACCAGCGAGAATAGGTTGCCACATCTCCTGTTATATGGTCCTCCAGGTACTGGTAAAACATCGACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACGCTACCACAATATGATACTCGAGCTGAATGCATCAGATGACAGGGGAATTGACGTTGTGAGGCAACAGATCCAGGATTTTGCTAGTACTCAAAGCTTCTCATTTGGGGCGAAGTCCTCAGTGAAATTGGTATTGTTAGACGAGGCGGATGCCATGACAAAAGATGCACAGTTTGCGTTGCGTAGAGTTATCGAGAAATACACCAAGAACACTAGATTTGCACTCATATGCAATCATGTCAATAAGATTATTCCAGCCTTACAGTCAAGATGTACACGCTTTCGTTTTCCCCCCCTTGACAACGTCCATGTTACCGTCCGGCTCAAATATGTTATAGAAGCGGAAATGCTCGATGTACCTGAGAAAGGATTAGCAGCACTTGTTCGTCTTAGCAATGGTGACATGAGAAAGGCTTTGAACATTTTGCAGTCAACACATATGGCTTCTAATCAGATAACAGAGGAAGCTGTCTATCTGTGCACTGGAAATCCAATGCCCAAGGACATAGAGCAAATATCTTACTGGCTTCTGAATGAACCATTTGCAGAAAGTTTCAGAAGGATATCTGAAATCAAGTCAAAAAAAGGACTTGCCTTGGTTGATATTGTAAGAGAAGTGACCATGTTTGTTTTCAAGATTACGATGCCTGCAGATGTTCGAGTTCAATTAATAAACGATTTGGCCGACATTGAGTACCGATTGACTTTTGGGTGCAATGATAAGTTGCAGCTTGGATCCCTCATTGCTACCTTCACCCAAGCTCGATCCACGCTAGTTCGTTCCGCAAAGTAG 1092 44.51 MTEVVSLMDVDNDDHNRSLKLSSKGKNVVVSGTPPDGKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGARYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFPPLDNVHVTVRLKYVIEAEMLDVPEKGLAALVRLSNGDMRKALNILQSTHMASNQITEEAVYLCTGNPMPKDIEQISYWLLNEPFAESFRRISEIKSKKGLALVDIVREVTMFVFKITMPADVRVQLINDLADIEYRLTFGCNDKLQLGSLIATFTQARSTLVRSAK 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3651418 3655443 + Bpe007041.1 Bpe14g00388 114697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00388 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Bpe14g00388 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 355 IPR008921 GO:0003677|GO:0006260
Bpe14g00388 363 CDD HLD_clamp_RFC 207 261 - -
Bpe14g00388 363 CDD AAA 60 198 - -
Bpe14g00388 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 37 359 - -
Bpe14g00388 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Bpe14g00388 363 Pfam ATPase family associated with various cellular activities (AAA) 76 195 IPR003959 GO:0005524|GO:0016887
Bpe14g00388 363 Gene3D - 36 197 IPR027417 -
Bpe14g00388 363 SMART AAA_5 72 203 IPR003593 -
Bpe14g00388 363 Gene3D - 202 263 - -
Bpe14g00388 363 Gene3D - 264 361 - -
Bpe14g00388 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 37 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00388 K10756 RFC3_5; replication factor C subunit 3/5 - tcc:18592371 623.239
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00056 Bpe14g00388 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00631 Bpe-Chr5:20196570 Bpe14g00388 Bpe-Chr14:3651418 4.23E-69 dispersed
Bpe13g00897 Bpe-Chr13:15027056 Bpe14g00388 Bpe-Chr14:3651418 5.41E-17 dispersed
Bpe14g00388 Bpe-Chr14:3651418 Bpe01g00787 Bpe-Chr1:8304576 3.22E-08 dispersed
Bpe04g00011 Bpe-Chr4:114133 Bpe14g00388 Bpe-Chr14:3651418 1.48E-63 transposed
Bpe08g00746 Bpe-Chr8:9104893 Bpe14g00388 Bpe-Chr14:3651418 7.32E-12 transposed
Bpe12g00681 Bpe-Chr12:12421187 Bpe14g00388 Bpe-Chr14:3651418 6.53E-09 transposed
Bpe14g01301 Bpe-Chr14:9974561 Bpe14g00388 Bpe-Chr14:3651418 8.30E-11 transposed
Bpe14g00388 Bpe-Chr14:3651418 Bpe02g00056 Bpe-Chr2:436432 3.57E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g244 . . . . Bpe02g00056 . . . Cmo04g02487 Cmo15g00675 . . . . Sed03g0420 . . Bhi04g01892 Tan11g1257 Cmetu03g1930 . Hepe02g2711 . Lcy10g1238 Cla08g00608 Cam08g1021 Cec08g0611 Cco08g0722 Clacu08g0732 . Cre08g0540 . . Cone17ag1292 Cone20ag0436 . . . Cme03g00527 . Blo18g00180 Bda11g00726 Bda13g01478 . Bpe14g00388 Bma01g00807 Bma02g00213 . . . . . Car04g02301 Car15g00613 Cpe01g02062 . . . . . . . . . . . . . . . Lsi08g00447 . Chy03g00359 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006625 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00388 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.463567 1.726536 2.190398