Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00388 ATGACCGAAGTAGTCTCTTTAATGGACGTCGATAACGATGACCACAATCGTTCTCTCAAACTTAGCAGCAAGGGCAAAAATGTTGTCGTTTCGGGCACTCCCCCCGATGGCAAAGCCACACCCTGGGTTGAGAAGTACCGCCCTCAGTCTCTTGCAGACGTTGCTGCCCATCGAGATATCGTCGATACCATTGATAGGCTTACCAGCGAGAATAGGTTGCCACATCTCCTGTTATATGGTCCTCCAGGTACTGGTAAAACATCGACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACGCTACCACAATATGATACTCGAGCTGAATGCATCAGATGACAGGGGAATTGACGTTGTGAGGCAACAGATCCAGGATTTTGCTAGTACTCAAAGCTTCTCATTTGGGGCGAAGTCCTCAGTGAAATTGGTATTGTTAGACGAGGCGGATGCCATGACAAAAGATGCACAGTTTGCGTTGCGTAGAGTTATCGAGAAATACACCAAGAACACTAGATTTGCACTCATATGCAATCATGTCAATAAGATTATTCCAGCCTTACAGTCAAGATGTACACGCTTTCGTTTTCCCCCCCTTGACAACGTCCATGTTACCGTCCGGCTCAAATATGTTATAGAAGCGGAAATGCTCGATGTACCTGAGAAAGGATTAGCAGCACTTGTTCGTCTTAGCAATGGTGACATGAGAAAGGCTTTGAACATTTTGCAGTCAACACATATGGCTTCTAATCAGATAACAGAGGAAGCTGTCTATCTGTGCACTGGAAATCCAATGCCCAAGGACATAGAGCAAATATCTTACTGGCTTCTGAATGAACCATTTGCAGAAAGTTTCAGAAGGATATCTGAAATCAAGTCAAAAAAAGGACTTGCCTTGGTTGATATTGTAAGAGAAGTGACCATGTTTGTTTTCAAGATTACGATGCCTGCAGATGTTCGAGTTCAATTAATAAACGATTTGGCCGACATTGAGTACCGATTGACTTTTGGGTGCAATGATAAGTTGCAGCTTGGATCCCTCATTGCTACCTTCACCCAAGCTCGATCCACGCTAGTTCGTTCCGCAAAGTAG 1092 44.51 MTEVVSLMDVDNDDHNRSLKLSSKGKNVVVSGTPPDGKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGARYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFPPLDNVHVTVRLKYVIEAEMLDVPEKGLAALVRLSNGDMRKALNILQSTHMASNQITEEAVYLCTGNPMPKDIEQISYWLLNEPFAESFRRISEIKSKKGLALVDIVREVTMFVFKITMPADVRVQLINDLADIEYRLTFGCNDKLQLGSLIATFTQARSTLVRSAK 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3651418 3655443 + Bpe007041.1 Bpe14g00388 114697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00388 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Bpe14g00388 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 355 IPR008921 GO:0003677|GO:0006260
Bpe14g00388 363 CDD HLD_clamp_RFC 207 261 - -
Bpe14g00388 363 CDD AAA 60 198 - -
Bpe14g00388 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 37 359 - -
Bpe14g00388 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Bpe14g00388 363 Pfam ATPase family associated with various cellular activities (AAA) 76 195 IPR003959 GO:0005524|GO:0016887
Bpe14g00388 363 Gene3D - 36 197 IPR027417 -
Bpe14g00388 363 SMART AAA_5 72 203 IPR003593 -
Bpe14g00388 363 Gene3D - 202 263 - -
Bpe14g00388 363 Gene3D - 264 361 - -
Bpe14g00388 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 37 359 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00056 Bpe14g00388 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00631 Bpe-Chr5:20196570 Bpe14g00388 Bpe-Chr14:3651418 4.23E-69 dispersed
Bpe13g00897 Bpe-Chr13:15027056 Bpe14g00388 Bpe-Chr14:3651418 5.41E-17 dispersed
Bpe14g00388 Bpe-Chr14:3651418 Bpe01g00787 Bpe-Chr1:8304576 3.22E-08 dispersed
Bpe04g00011 Bpe-Chr4:114133 Bpe14g00388 Bpe-Chr14:3651418 1.48E-63 transposed
Bpe08g00746 Bpe-Chr8:9104893 Bpe14g00388 Bpe-Chr14:3651418 7.32E-12 transposed
Bpe12g00681 Bpe-Chr12:12421187 Bpe14g00388 Bpe-Chr14:3651418 6.53E-09 transposed
Bpe14g01301 Bpe-Chr14:9974561 Bpe14g00388 Bpe-Chr14:3651418 8.30E-11 transposed
Bpe14g00388 Bpe-Chr14:3651418 Bpe02g00056 Bpe-Chr2:436432 3.57E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00388 K10756 - tcc:18592371 623.239