Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00395 ATGATGACGGGAATTCGCAATAATCACAGAAAACTATGCTCCAGATGGGCAACATTCGCTAGAATGTATAGTTCAGGTGAAAAACTTAGCGATGATATTGATTTGACAAGACGAATATGTAAAATTATGATGACTTGTCCAGTATTGGCACTTGATACTGCACTCAACCAAAGTGGAATTAAGATTTCAACAAACATTGTCGAGGATGTTCTAAACAGATTTGAGAATGCTGGTATGGTTGCATTTCGGTTCTTTCAATGGGCCGAGAAGCAAGGAAGTTACAGCCACAGCATAAAGGCTTATCACACCATGATTGGGTCTTTAGCCAAGATAAGGCAGTATCAAATTATGTGGGATCTAGTGAATGCGATGAGGAGCAAACGAATACAAAATGTAGAGACTTTTTGTATAATCATGAGAAAATATGCTCGAGCCCAGAAGGTGGACGAGGCCATTTATGCCTTTAATGTGATGGATAAATATGGTATCGAACCAAATATAGTGGCACTCAACGGTCTACTAAGTGCTTTGTGCAAGTCCAAGAATGTGAGGAAGGCTCAAGAAATTTTCGATAGTATGAAGGATAGATACGAACCAGATCCGAAAACATACAGTATTCTGCTCCAAGGATGGGGTAAGGCTCCGAATCTGCCTCAAGCAAGGGGAATTTTCAGAGAAATGATCAACGATGGTTGCTCCCCTGACATAGTGACGTACAGCATTATGGTTGATATCCTTTGCAAGGCCGGGAGAGTTGATGAAGCCGTTGAGATTGTTAACGAAATGAATTCTAAGTCATTCACCCCTACATCTTTCACTTATAGTGTTTTGATCCATACTTATGGGACAGAAAATCGAATAGAAGATGCTGTTAGAACATTCTCGGATATGGAAAAAGACGGAGTTACGGCTGATGTAGCTGTTTATAACGCATTGATTAGCGCTTTTTGCAAAGCAAACAAGACGAAGAATGTCAATAGAGTCATGCATGAGATGGAAAATAAAGGGGTCAAGCCTAATTCTCGAACGTTTAATATCGTTCTTCACAATTTGATCGACCATGGGGAGACGGATGAAGCCTTCACCGTCTTTCGCAAGATGATCAAGATTTGTGATCCCGATTCGGACACATATACGATGATTGTGAAGATGTTTTGTGATAAGAATCAATTAAAGGAGGCTCGTAAAGTTTGGAAGTATATGAGGTCTAAGAAGTTTGTTCCTAGCATGCATACTTATTCTGTGCTAATAAATGGGTTGTGCAAGATGGGTGACGCCTTAAAAGCTAGTGTGATTTTGGAGGAGATGATAGAGAAGGGAATTCGACCGCCAAGTGCGACGTTCGGAAGGCTTCGACAGTTGCTTTTGAAAGACGGTAGAGAAGATGTTCTTAATTTTCTTCAAGGAAAAATGAATCTACTTGTGCAGGAGCCGTTGTGCGACTGA 1446 40.59 MMTGIRNNHRKLCSRWATFARMYSSGEKLSDDIDLTRRICKIMMTCPVLALDTALNQSGIKISTNIVEDVLNRFENAGMVAFRFFQWAEKQGSYSHSIKAYHTMIGSLAKIRQYQIMWDLVNAMRSKRIQNVETFCIIMRKYARAQKVDEAIYAFNVMDKYGIEPNIVALNGLLSALCKSKNVRKAQEIFDSMKDRYEPDPKTYSILLQGWGKAPNLPQARGIFREMINDGCSPDIVTYSIMVDILCKAGRVDEAVEIVNEMNSKSFTPTSFTYSVLIHTYGTENRIEDAVRTFSDMEKDGVTADVAVYNALISAFCKANKTKNVNRVMHEMENKGVKPNSRTFNIVLHNLIDHGETDEAFTVFRKMIKICDPDSDTYTMIVKMFCDKNQLKEARKVWKYMRSKKFVPSMHTYSVLINGLCKMGDALKASVILEEMIEKGIRPPSATFGRLRQLLLKDGREDVLNFLQGKMNLLVQEPLCD 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3696294 3697739 + Bpe007048.1 Bpe14g00395 114704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00395 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Bpe14g00395 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Bpe14g00395 481 PANTHER OS03G0761300 PROTEIN 11 478 - -
Bpe14g00395 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Bpe14g00395 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Bpe14g00395 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Bpe14g00395 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Bpe14g00395 481 SUPERFAMILY TPR-like 130 439 IPR011990 GO:0005515
Bpe14g00395 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
Bpe14g00395 481 Pfam PPR repeat 134 163 IPR002885 -
Bpe14g00395 481 Pfam PPR repeat family 305 351 IPR002885 -
Bpe14g00395 481 Pfam PPR repeat family 373 422 IPR002885 -
Bpe14g00395 481 Pfam PPR repeat family 165 210 IPR002885 -
Bpe14g00395 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Bpe14g00395 481 Gene3D Tetratricopeptide repeat domain 50 195 IPR011990 GO:0005515
Bpe14g00395 481 Gene3D Tetratricopeptide repeat domain 332 478 IPR011990 GO:0005515
Bpe14g00395 481 Gene3D Tetratricopeptide repeat domain 196 331 IPR011990 GO:0005515
Bpe14g00395 481 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 11 478 - -
Bpe14g00395 481 TIGRFAM PPR: pentatricopeptide repeat domain 237 270 IPR002885 -
Bpe14g00395 481 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Bpe14g00395 481 TIGRFAM PPR: pentatricopeptide repeat domain 134 167 IPR002885 -
Bpe14g00395 481 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Bpe14g00395 481 TIGRFAM PPR: pentatricopeptide repeat domain 343 369 IPR002885 -
Bpe14g00395 481 TIGRFAM PPR: pentatricopeptide repeat domain 169 196 IPR002885 -
Bpe14g00395 481 TIGRFAM PPR: pentatricopeptide repeat domain 377 409 IPR002885 -
Bpe14g00395 481 TIGRFAM PPR: pentatricopeptide repeat domain 411 443 IPR002885 -
Bpe14g00395 481 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Bpe14g00395 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 370 IPR002885 -
Bpe14g00395 481 Pfam PPR repeat 230 262 IPR002885 -
Bpe14g00395 481 Pfam PPR repeat 267 298 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00395 - - - qsu:112022190 706.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00581 Bpe-Chr2:3760455 Bpe14g00395 Bpe-Chr14:3696294 5.82E-26 dispersed
Bpe04g00260 Bpe-Chr4:1719372 Bpe14g00395 Bpe-Chr14:3696294 5.27E-06 dispersed
Bpe04g01078 Bpe-Chr4:8300902 Bpe14g00395 Bpe-Chr14:3696294 1.00E-12 dispersed
Bpe06g00123 Bpe-Chr6:2030559 Bpe14g00395 Bpe-Chr14:3696294 1.85E-10 dispersed
Bpe09g00342 Bpe-Chr9:3314931 Bpe14g00395 Bpe-Chr14:3696294 2.98E-06 dispersed
Bpe10g00778 Bpe-Chr10:13964749 Bpe14g00395 Bpe-Chr14:3696294 1.43E-20 dispersed
Bpe11g00009 Bpe-Chr11:69959 Bpe14g00395 Bpe-Chr14:3696294 2.89E-07 dispersed
Bpe11g00133 Bpe-Chr11:949199 Bpe14g00395 Bpe-Chr14:3696294 1.83E-65 dispersed
Bpe11g01030 Bpe-Chr11:7650830 Bpe14g00395 Bpe-Chr14:3696294 2.13E-24 dispersed
Bpe11g01613 Bpe-Chr11:12260535 Bpe14g00395 Bpe-Chr14:3696294 8.55E-113 dispersed
Bpe13g00453 Bpe-Chr13:12046527 Bpe14g00395 Bpe-Chr14:3696294 1.11E-08 dispersed
Bpe13g00790 Bpe-Chr13:14299629 Bpe14g00395 Bpe-Chr14:3696294 1.82E-59 dispersed
Bpe14g00006 Bpe-Chr14:158941 Bpe14g00395 Bpe-Chr14:3696294 1.29E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00395 Bpe_Chr14 FPKM 21.537092 23.995293 54.787514 53.522522 26.469522 25.621582 24.034887 7.537835 7.906133 8.092884