Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00408 CAGAGAGTGGGGGTGGTGGTTCTGGTTCTGTCAATCTTAGAATTGACCTCGCTTTCTTCTTCTTCGTCCTTGGATGATGGCGAACGGATTTTCAGGGCGGACGGGAAGGTGTTGGAGCTCGATGATTCCAATTTTGATTCCGCTATTTCATCTTTTGATTTCATCTTGGTCGACTTCTATGCTCCCTGGTGTGGCCACTGCAAGCGTCTTTCTCCGCAGTTAGATGCTGCCGCTCCTTTGCTTGCTGGCTTGAAGGAACCCGTAGTGATTGCAAAAGTAAATGCAGACAAGTTTAAGGTTCTTGGAAAGAAATATGACGTTGATGCATATCCTACTTTGAAGATCTTTGCGCATGGCGTCCCTATTGACTATCATGGGCCCAGAAAACCAGATTTGCTTGTAAGATACCTGAAGAAATTCGTTGCTCCTGATGTTTCCATTCTTGATTCAGACTCTGCTATCAAGGACTTTGTCGAAACATCTGGCACTTTTTTTCCCATCTTCATCGGCTTTGGCTTGAGTGAGTCAATTATCTCAGAGTTAGCCGTCAAGTACAAGAAAAAGGCATGGTTTTCTGTGGCTAAGGATTTCTCCGATGATGTTATGATCTCGTACAATTTTGACAAAGTTCCCGCATTAGTATCTATTCATCCCACCTACGACAATGAGCAGAACATTTTTTATGGTCCCTTTGAAGATCGATTCTTGGAAGAGTTTATCAAACAAAGTTTTCTCCCTCTTGTTGTACCAATAAAGCATGACACTCTAAAGCTATTGAAAGAAGAGGAAAGGAAAATTGTTCTTGCTCTTGTGGAAGACGAGGATGAAGATGAGACAAAAAACCTGATTAAGCTACTGAAGGCCAGTGCATATGTTAATCGTGACTTGATATTTGGGTACGTTGGGATCAAGCAGTGGGCAGAGTTTGCTGAAACATTCGGTGCTAATAAGAAGACAACACTACCAAAATTGGTTGTTTGGGATGGAAACGAGGAATATTTAACGGTTATTGGCTGCGAAACCATTACAGTGGATGACGAAGTGACCCAGGTCTCGAAGTTCCTCGAAGGATACAGGGGAGGAAGAGTTGTAGAAAATAGAATTGCCGGTACATCAGTTCTCGGCTACATCATTGGGATTGGGGCTGTGTATATTATTGTCTTTATTGGCGGGGTTTGGATGGTTATTAGGAAGATCAATCATGGGGACGAGCCTCCTCGAGTAGGTACAGAACCTGTTGATCTTGCCCTGGGTTCTCCTTCTGAGGTTGTGAACAGCGATCATAGAAGTGGAGAGAAAGAAGAT 1305 43.37 QRVGVVVLVLSILELTSLSSSSSLDDGERIFRADGKVLELDDSNFDSAISSFDFILVDFYAPWCGHCKRLSPQLDAAAPLLAGLKEPVVIAKVNADKFKVLGKKYDVDAYPTLKIFAHGVPIDYHGPRKPDLLVRYLKKFVAPDVSILDSDSAIKDFVETSGTFFPIFIGFGLSESIISELAVKYKKKAWFSVAKDFSDDVMISYNFDKVPALVSIHPTYDNEQNIFYGPFEDRFLEEFIKQSFLPLVVPIKHDTLKLLKEEERKIVLALVEDEDEDETKNLIKLLKASAYVNRDLIFGYVGIKQWAEFAETFGANKKTTLPKLVVWDGNEEYLTVIGCETITVDDEVTQVSKFLEGYRGGRVVENRIAGTSVLGYIIGIGAVYIIVFIGGVWMVIRKINHGDEPPRVGTEPVDLALGSPSEVVNSDHRSGEKED 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3816309 3819957 + Bpe024977 Bpe14g00408 114717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00408 435 Pfam Thioredoxin 37 138 IPR013766 -
Bpe14g00408 435 ProSiteProfiles Thioredoxin domain profile. 18 142 IPR013766 -
Bpe14g00408 435 ProSitePatterns Thioredoxin family active site. 56 74 IPR017937 -
Bpe14g00408 435 Gene3D Glutaredoxin 233 367 - -
Bpe14g00408 435 Gene3D Glutaredoxin 20 150 - -
Bpe14g00408 435 SUPERFAMILY Thioredoxin-like 31 142 IPR036249 -
Bpe14g00408 435 CDD PDI_a_family 38 137 - -
Bpe14g00408 435 PRINTS Thioredoxin family signature 63 72 - -
Bpe14g00408 435 PRINTS Thioredoxin family signature 55 63 - -
Bpe14g00408 435 PRINTS Thioredoxin family signature 106 117 - -
Bpe14g00408 435 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 8 435 - -
Bpe14g00408 435 PANTHER PROTEIN DISULFIDE ISOMERASE 8 435 - -
Bpe14g00408 435 Pfam Thioredoxin-like domain 181 332 - -
Bpe14g00408 435 MobiDBLite consensus disorder prediction 407 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00408 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - jre:109011811 554.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00385 Bpe-Chr14:3619077 Bpe14g00408 Bpe-Chr14:3816309 6.91E-11 dispersed
Bpe14g00408 Bpe-Chr14:3816309 Bpe15g00165 Bpe-Chr15:12111874 2.55E-12 dispersed
Bpe12g00616 Bpe-Chr12:11856091 Bpe14g00408 Bpe-Chr14:3816309 6.36E-19 transposed
Bpe14g00408 Bpe-Chr14:3816309 Bpe02g01663 Bpe-Chr2:19317919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1206 . . . . . . . Blo17g00155 Blo18g00166 . Bda13g01447 . Bpe14g00408 . Bma02g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006012 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00408 Bpe_Chr14 FPKM 9.786449 13.239539 13.66441 13.032618 13.950764 12.294067 14.82302 6.680011 5.952613 6.507132