Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00416 ATGTTTGAGGGGAGCATCCCATTTCGCTCATCCGTTCGTCCGTCCCTGGCTCCGGACCCTCCCTTCTCACTTCCGGCGAGGGCTCCGCGAAACAAGCCAGGCTTGAGGATAAAACCGATTTATGGGAGGAATACAACATCGAAGCTTAGTTCTGTTGCAGTTCCTTCGAATCTGACAGTTGGTGGACAGTTGGTACGAACCGTTGACGAGAATGAGTTGAGAAAGAAACGGGTGTTTTTCTTGGATGTTAATCCACTCTGCTATGCCGGTAGTAGACCTAGCTTAAGCTCGTTTATTCATTGGGTCTCCCTTTTCTTCTGCCAAGTGAGCCGTACTGACCCTGTAATTGCAGTTCTTGATGGGGAAGGGGGTAATGAGTATCGAAGGCAAATACTACCATCATATAAAGCACATAGAAGTAAATTCTCAAGACGTCCATCAACTTCAATCAGACCTTCACATGGTGTTTTTAGAAATTCACATCAAGTTATCATTAATGTCCTCGAAGAATGCAACGTGCCAGTCATAAAAATTGAAGGTCATGAAGCCGATGATGTCGTTGCAACACTTGTAGAACAAGTTTTAGATAGAGGATACAGAGTGGTGATTGGATCTCCAGATAAAGATTTTAAGCAACTCATTTCAGAAGATGTTCAAATTGTCATGCCTTTGGCTGACCTAAACAGATGGTCCTTTTACACCTTAAAGCACTATCTGGCTCAGTATAAGTGTGATCCACGCTCTGACTTGAGCCTCAGATGCATACTCGGCGATGAGGTTGACGGTGTGCCGGGAATTCAGCACGTTGCTCCTGGGTTTGGGCGAAAAACTGCCGTAAAGCTTTTAAAGAAGCATGGTTCATTGGAAAATTTACTGAATACGGCCGCCGTAAGAACTGTTGGACGGCAATATGCACAAGATGCTCTTGTAAAGTACGCCGACTATCTTTGGAGAAACCAAAAAGTACTTGCTCTAAGAAGGGATGTTGACGTCCAACTTCAACAGCAATGGTTGGCCGAGAGAGACACGAGCAATGACTCGATCATTTTTTCAAACTTCTCGAAATCGATGAAATGA 1077 44.48 MFEGSIPFRSSVRPSLAPDPPFSLPARAPRNKPGLRIKPIYGRNTTSKLSSVAVPSNLTVGGQLVRTVDENELRKKRVFFLDVNPLCYAGSRPSLSSFIHWVSLFFCQVSRTDPVIAVLDGEGGNEYRRQILPSYKAHRSKFSRRPSTSIRPSHGVFRNSHQVIINVLEECNVPVIKIEGHEADDVVATLVEQVLDRGYRVVIGSPDKDFKQLISEDVQIVMPLADLNRWSFYTLKHYLAQYKCDPRSDLSLRCILGDEVDGVPGIQHVAPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGRQYAQDALVKYADYLWRNQKVLALRRDVDVQLQQQWLAERDTSNDSIIFSNFSKSMK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3849838 3853259 + Bpe024978 Bpe14g00416 114725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00416 358 Gene3D - 242 323 - -
Bpe14g00416 358 Gene3D - 65 241 - -
Bpe14g00416 358 CDD PIN_53EXO 113 223 - -
Bpe14g00416 358 SUPERFAMILY PIN domain-like 76 242 IPR029060 -
Bpe14g00416 358 SMART 53exo3 76 341 IPR002421 GO:0003677
Bpe14g00416 358 Pfam 5'-3' exonuclease, N-terminal resolvase-like domain 102 222 IPR020046 GO:0003677
Bpe14g00416 358 PANTHER DNA POLYMERASE I 11 357 IPR002298 GO:0003887|GO:0006261
Bpe14g00416 358 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 11 357 - -
Bpe14g00416 358 Pfam 5'-3' exonuclease, C-terminal SAM fold 251 336 IPR020045 GO:0003677|GO:0003824
Bpe14g00416 358 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 251 344 IPR036279 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00416 - - - qsu:112017372 451.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00320 Bpe-Chr6:14528843 Bpe14g00416 Bpe-Chr14:3849838 5.65E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1397 . . . . . . . . . . . . . . Sed03g3083 . . Bhi04g02527 Tan11g0060 Cmetu03g2067 . Hepe02g3457 . Lcy10g2348 . . . . . . . . . . . . . . . Blo17g00151 . . Bda13g01440 . Bpe14g00416 . Bma02g00184 . . . . . . . . . . . . . . . . Cla11g00787 Cam11g0821 Cec11g0801 Cco11g0806 Clacu11g1037 Cmu11g0898 Cre11g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011265 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00416 Bpe_Chr14 FPKM 9.580368 12.009579 15.553435 16.434248 11.780305 10.412062 10.849026 32.23848 30.697281 33.696037