Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00439 ATGGCTAGTCCACATGAAAGGTGGATAGACCGCCTTCAATATTCGTCTTTATTCTGGTCTCCCCCACAAGATGAGCTGCAGCGAAAGGCTCAAATAAATGCCTACGTCGAATGCTTAGGTCAATTCACATCAGATAGATTTCCAGAGGATATTGCTGAGATGATTCGCAGCCATTATCCATCGAAAGAAAACCGCCTTTTTGACGATGTTTTAGCTACATTTATTCTCCATCATCCGGACCATGGGCATGCCATTGTTCTCCCAATCATTTCTTGTATTCTCGATGGTTTATTAACGTACGATAGGACTACGCCCCCTTTTGCTTCTTTCATATCCTTATTTTGTCCAGGGAAAGAGAATGATTATTCTGAACAATGGGCCCTGGCTTGTGGGGAGATTTTGAGAATTTTAACTCATTATAATCGACCAGTATACAAGATTGAACAGGAGAATACTGAAAGAGCTCAAAGCAGTCTAAGCTGTTCGACAACAAATGAGTCTGATGATAGTGAATCTGGCCAAACATCTTTACAACAGGAGAAAAAGCCCATAAGGCCTTTGTCTCATTGGATAACTGATATTTTACTGGCTGCACCACTCGGTATCAGAAGCGACTACTTTCGGTGGTGCAGTGGTGTTATGGGAAAATATGCTGCTGGAGAACTTAAACCACCTTTAATTGCTTCGACTCGTGGATCTGGAAAGCACCCTCAACTCATGCCGTCAACTCCAAGGTGGGCTGTTGCAAATGGTGCAGGTGTTATATTAAGTGTTTGTGATGAGGAAGTTGCTCGTTATGAGACTGCTACTTTAACAGCAGCTGCTGTTCCTGCACTTCTTCTTCCCCCTCCCACTACTCCTCTAGATGAGCATCTTGTTGCTGGATTACCAGCTCTCGAACCATATGCACGATTATTTCATAGGTATTATGCAATTGCTACCCCAAGTGCCACACAAAGACTTCTTCTAGGACTTTTAGAAGCATCCCCATCATGGGCACCGGATGCCCTTGATGCGGCTGTTCAACTGGTTGAACTCCTTCGAGCTGCTGAAGATTATGCATCTGGTATACGGCTTCCTAGAAACTGGATGCATTTGCATTTCTTACGTGCTATTGGGACTGCAATGTCAATGAGAGCTGGAATTGTGGCTGACGCCGCAGCAGCATTACTTTTTCGTTTACTTTCTCAGCCTGCTTTACTTTTTCCTCCTTTACGACAAGTTGAAGGAGTTGAAGTTCAACATGAACCTCTGAGTGGTTATATTTCGTCATACCAAAAACAGATTGAAATTCCAGCTGCAGAAGCAACTATTGAAGCCACTGCACAGGGGATCACATCTATGTTATGTGCCCATGGCCCTGAGGTTGAATGGAGAATTTGTACCATTTGGGAAGCAGCTTATGGCCTTATTCCTTTAAGTTCATCTGCAGTAGATCTTCCTGAAATTATAGTCGCAACACCCCTACAACCTCCCACCTTATCATGGAATCTCTTCATTCCTCTCCTTAAAGTTCTCAAATATCTTCCTCGTGGAAGTCCATCAGAAGCATGTCTTATGAAGATTTTTGTTGCTACCGTTGAAGCTATTTTACAGAGAACTTTTCCTTCAGAGTCTTCCAGAGAAGAGATGAGAAAGATGAAATACCTTTCCGGCATTGGCATGGCTTCCAAAAGCCTTGCTGTGGCAGAGCTTCGAACAATGGTGCATTCTCTCTTTTTAGAATCATGTGCCTCTGTAGAGCTCGCTTCACGCTTGCTTTTTGTTGTGTTAACTGTTTGCGTTAGTTACGAGGCCCAGTCGATTGGAAGCAAAAGGCATAGAGAAAAAGAAAATGATCCACTGGATCAAAGCAATGGGGAGTTTCATGTAGAGTTAGAGCCTGTTAGAGGAAATAGAAATAATAGAAAGAAGAAAAGACAAGGAGCTGTATCAACTTTTGATTCTTATGTTCTGGCTGCTGTTTGTGCTCTTGCTTGTGAGCTTCAGTTGGTTCCTCTGATTTCACGGGGTTGTCTTCCAAATTCTCAAGATGGGAAGGATGTAACCAAGCCTTTGAAAATAAATGGTTCATGTAATGAGTTCAGAAATAGTCTCAACTCTGCCATTCTCTCGACTCGCAGAATCTTAGCCATCCTGGAGGCACTTTTTTCTTTGAAGCCTTCTTCTGTTGGCACATCGTGGAGTTACAGCTCAAATGAGATAGTTGCAGCAGCCATGGTTGCTGCTCATGTTTCTGAGCTTTTTAGACGATCCAAAGCCTGCATGCATGCTCTCTCTGTATTGATCCGCTGTAAGTGGGACAATGAAATTTTCAATCGAGCCTCATCTCTATACAACCTTATTGATATTCACAGTAAAACTGTTGCGACTATTGCTAACATGGCAGAGCCATTAGAGGCACACTTAATCAACGCTCCAACTATAAAGGACTCGTTTACCTGTTCTGCTGGTAGAAAACAAAATGAAGGTGAACAGAAAGTGTGCTTTGAATCAAGTACAAACCCTAACTCACTTTGTGAGGGGTCATCTTCAGGAACTAAAACTTCCCCCGATAATGCATCAAATGCAAGAGAATATATGGGAAATACCTCGGGTAAAGGGTTAGCAAGCTTCCCCTTAGATGCTTCTGATTTGGCCAACTTTCTTACAATGGACAGGCATATAGGATTTAACTGCTGTGCTCAAGTTCTTTTGAGATCTGTCTTGTCAGAGAAGCAAGAACTATGTTTCTCTGTTGTTTCTCTTCTGTGGCAAAAGTTAATTGCAGTACCTGAAACCCAGCCTAGTGAGGAAAGTACTTCTGCCCAGCAAGGATGGAGGCAGGTAGTCGATGCATTATGCAATGTTGTGTCGGCCTCGCCCACTAAGGCAGCTACGGCAGTTGTGCTTCAGGCCGAGAGAGAATTGCAGCCTTGGACTGCCAAAGATGATGATCAAAGCCAGGAGGTGTGGAGAATCAACCAGAGGATCATAAAGTTAGTTGTTGAGTTAATGAGAAGTCACGATACACTTGAATCATTAGTTATATTAGCCAGCGCATCTGATCTACTTCTACGCGCCACTGATGGGTTGCTCGTAGACGGAGAAGCTTGCACTTTACCTCAATTGGAGCTTCTGGAAGCAACTGCTAGGGCAGTTCAGTTAGTGATGGAGTGGGGGGAGTCCGGATTGTCAGTGGCTGTCGGCCTACTGAACTTATTGAAGTGTCGCCTCCCGGCTACCATCCGATGCCTTTCTCACCCCAGTGCACATGTCCGAGCCTTGAGCACGTCTGTTCTACGTGACATTCAACACAGTGCTTCGATTGATTTTCGTTCAAAACGAATGAACGTGAATGGTGTCCATGGCCCGTCTCATCAGCATCTGAAAGCCGACGGTTTCAACTGGCAAACAGATATCGAGAAGTGCTTGACATGGGAAGCTCATAGCCGAATCGTGATGGGCATGTCAAATCAAGCTCTTTATACAGCTGCTAAGGAGTTGGGTTGCTCTATTCAAATATGA 3507 43.94 MASPHERWIDRLQYSSLFWSPPQDELQRKAQINAYVECLGQFTSDRFPEDIAEMIRSHYPSKENRLFDDVLATFILHHPDHGHAIVLPIISCILDGLLTYDRTTPPFASFISLFCPGKENDYSEQWALACGEILRILTHYNRPVYKIEQENTERAQSSLSCSTTNESDDSESGQTSLQQEKKPIRPLSHWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPLIASTRGSGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTPLDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEASPSWAPDALDAAVQLVELLRAAEDYASGIRLPRNWMHLHFLRAIGTAMSMRAGIVADAAAALLFRLLSQPALLFPPLRQVEGVEVQHEPLSGYISSYQKQIEIPAAEATIEATAQGITSMLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPTLSWNLFIPLLKVLKYLPRGSPSEACLMKIFVATVEAILQRTFPSESSREEMRKMKYLSGIGMASKSLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVSYEAQSIGSKRHREKENDPLDQSNGEFHVELEPVRGNRNNRKKKRQGAVSTFDSYVLAAVCALACELQLVPLISRGCLPNSQDGKDVTKPLKINGSCNEFRNSLNSAILSTRRILAILEALFSLKPSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLIRCKWDNEIFNRASSLYNLIDIHSKTVATIANMAEPLEAHLINAPTIKDSFTCSAGRKQNEGEQKVCFESSTNPNSLCEGSSSGTKTSPDNASNAREYMGNTSGKGLASFPLDASDLANFLTMDRHIGFNCCAQVLLRSVLSEKQELCFSVVSLLWQKLIAVPETQPSEESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWTAKDDDQSQEVWRINQRIIKLVVELMRSHDTLESLVILASASDLLLRATDGLLVDGEACTLPQLELLEATARAVQLVMEWGESGLSVAVGLLNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIQHSASIDFRSKRMNVNGVHGPSHQHLKADGFNWQTDIEKCLTWEAHSRIVMGMSNQALYTAAKELGCSIQI 1168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4023960 4033148 - Bpe007090.1 Bpe14g00439 114748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00439 1168 MobiDBLite consensus disorder prediction 833 860 - -
Bpe14g00439 1168 PANTHER PROTEIN GIGANTEA-LIKE ISOFORM X1 1 1168 - -
Bpe14g00439 1168 PANTHER PROTEIN GIGANTEA 1 1168 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 375 397 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 275 293 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 343 363 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 248 269 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 324 343 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 230 248 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 447 470 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 201 219 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 299 319 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 4 22 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 122 146 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 181 201 IPR026211 GO:2000028
Bpe14g00439 1168 PRINTS Protein GIGANTEA signature 507 528 IPR026211 GO:2000028
Bpe14g00439 1168 MobiDBLite consensus disorder prediction 155 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00439 K12124 GI; GIGANTEA - qsu:112019344 1766.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00199 Bpe14g00439 CCT
Bpe02g01107 Bpe14g00439 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00199 Bpe-Chr2:1392602 Bpe14g00439 Bpe-Chr14:4023960 4.78E-51 transposed
Bpe14g00439 Bpe-Chr14:4023960 Bpe02g01107 Bpe-Chr2:14685263 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1318 . . . . Bpe02g00199 . . Bma01g02522 Cmo04g02577 Cmo15g00583 . . . . Sed11g1376 Cpe06g00912 Cpe13g00698 Bhi04g01748 Tan11g1103 Cmetu03g1200 . Hepe02g2812 . . . . . . . . . Cone4ag1468 . Cone17ag0770 Cone20ag0365 . . . . . Blo18g00145 . Bda13g01418 Bpe02g01107 Bpe14g00439 . . . . . . . Car04g02369 Car15g00537 Cpe01g02131 . Bhi09g01545 Tan01g3069 . . . . . Cla09g00952 Cam09g1003 Cec09g1006 Cco09g1018 . . . . . Chy03g00490 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001222 2 6 3 2 3 2 3 2 2 2 2 2 3 1 2 2 2 3 3 2 2 2 2 2 1 2 2 8 6 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00439 Bpe_Chr14 FPKM 14.512777 14.7677 12.72775 13.979853 41.767601 37.345016 44.214581 16.2486 16.250576 18.084808