Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00445 ATGGCGGATCAGGAGGAGGAGGACCTTCGAATGGCCCTGAGGATGAGTATGCAGCAGCACTCTCTGCCTGAGCCCAAGCGAAGCAAACCCATGGATGTTCCTATTGGAGCTCTTACCGACTCGACGGAGGAGTCGATGGAGGTGAAGACTCGTCGGATGCAGAGGGAGCTAATGGCTGCTGCTGCTGAAAAGCGGATGCTTGCGTCGAAGAGCGCCACATCAACTGGTGCTGCTTTGAAGGTGGAGCACAAGGATAGGGAATTGAGCGTGGAAGGTGTGAATTTGGGGAGGGAGCTATCTGAGAAGGAAGCGAAACAGTTGTTTTCTATGGTGTTTGGGTCCGAAGTTTCTAGAGACATTCTTGCGCAATGGAGTAATCAGGGAATAAGGTTCAGCCCTGATCCAGAAACATCTATAGGTCTGGTACAGCATGAAGGTGGGCCTTGTGGCGTTCTAGCTGCTGTTCAAGCATATGTCATCAAGTACCTTCTTTTCCTCCCAGAAGAATTGAAAAATGTTGTGCCAACACCAAACATTCAAAAAAGTTATGGTATAGAAAGATTGCCAAAAAGCAAAGGTGCTGTAACCAATGATTTTGCTTCTCTCACTGAAGATGCAAAAACAAGAGCGCTGGTCAGAAGCATGGGTGAGATTTTATTTTTGTGTGGAAATAATGAAAGGGGTGTTGTTGCAACTTTGAGTGTTATAGACCATGCCTGTGAGGGATCTGAAAACAGCACTAAGGAGGAAATCATTTCAAAAGCACTTGGTGGTCTTTCAGTTGATTCAGCGGCTGCTTTGAAGAAAGTGCTGAGGGTAAAGACATACAAATCACAAGCGATTGCCTTTAGAAGGATTCAAGAGCTAATTCCAATTTTCCAAAGTCGCATGGGTGCATTGCTATTCCTCATTTCTGCTTTACTTTCTAGAGGACTGGATATGGTTCAAGGTGACAGGGATGATCCAAGCCTCCCATTGGTCACTGCTCCATTTGGACATGCCTCACAGAGAGACACTACGGAGCTGTCTACCGAGAATAAGGAGCTGAAACTGAAGTTACAAGCTTTGGAACAACAAGCCCATCTTAGGGACGCTTTAAATGAGGCATTGAAGGAGGAAGTTCAACGGCTCAAGATTGCTGCCGGACAAGTACCGGCAGGTAATGGCTGCTCGTATAACCGAGGGCTGCCTCCTCAATTCCCATCTCTACATCAATTTGGCACCTCAAACTTTTTGGTTCACCGGCCGCACTCCTCCTCAAATGAACAAAATCTCAATCTCAACGGCCAACAATCCCGTCCAGGGTTCATGGACTTCAGTCCTAAGGTCGACTAA 1335 46.89 MADQEEEDLRMALRMSMQQHSLPEPKRSKPMDVPIGALTDSTEESMEVKTRRMQRELMAAAAEKRMLASKSATSTGAALKVEHKDRELSVEGVNLGRELSEKEAKQLFSMVFGSEVSRDILAQWSNQGIRFSPDPETSIGLVQHEGGPCGVLAAVQAYVIKYLLFLPEELKNVVPTPNIQKSYGIERLPKSKGAVTNDFASLTEDAKTRALVRSMGEILFLCGNNERGVVATLSVIDHACEGSENSTKEEIISKALGGLSVDSAAALKKVLRVKTYKSQAIAFRRIQELIPIFQSRMGALLFLISALLSRGLDMVQGDRDDPSLPLVTAPFGHASQRDTTELSTENKELKLKLQALEQQAHLRDALNEALKEEVQRLKIAAGQVPAGNGCSYNRGLPPQFPSLHQFGTSNFLVHRPHSSSNEQNLNLNGQQSRPGFMDFSPKVD 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4072844 4084009 + Bpe007096.1 Bpe14g00445 114754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00445 444 MobiDBLite consensus disorder prediction 415 444 - -
Bpe14g00445 444 PANTHER UNCHARACTERIZED 2 336 IPR039785 GO:0004843|GO:0071108|GO:1990380
Bpe14g00445 444 Coils Coil 339 373 - -
Bpe14g00445 444 SMART DUF4205_3 108 395 IPR025257 -
Bpe14g00445 444 MobiDBLite consensus disorder prediction 415 435 - -
Bpe14g00445 444 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAM188A-LIKE 2 336 - -
Bpe14g00445 444 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 4 23 IPR003903 -
Bpe14g00445 444 Pfam Deubiquitinating enzyme MINDY-3/4, conserved domain 110 336 IPR025257 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00445 K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4 [EC:3.4.19.12] - jre:109011423 444.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00445 Bpe-Chr14:4072844 Bpe13g00723 Bpe-Chr13:13803757 1.15E-13 dispersed
Bpe14g00445 Bpe-Chr14:4072844 Bpe02g01111 Bpe-Chr2:14753662 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1279 . . . . . . . . . . . . . . Sed11g1345 . . Bhi04g01785 Tan11g1147 Cmetu03g0084 . Hepe02g2790 . Lcy10g1347 . . . . . . . . . . Cone20ag0385 . . . . . Blo18g00139 . . . Bpe14g00445 . . . . . . . Car04g02353 . . . . . . . . . . . . . . . . . . . Chy03g00519 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006024 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 2 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00445 Bpe_Chr14 FPKM 12.214881 13.418142 9.995481 10.134352 8.684288 8.830056 7.706653 11.615287 11.131449 10.697022