Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00455 ATGGGCGTCGTCGACCCCCGATCCAACGAAATGCTCGGCCTGGATTTCCCCCCTCTCCTTGACCTTCGGCTCTTCTCCCAGTCCGATCTCTACTCTCTCTCCCGTGCCTCTTCTTCCGCCTCCATTTTTCACGACAACGATGACGTTTTAGTGCCAAAGATCGACCGCTCCCTCTTTAATGAGTCCGCCGGGAGTCGCAAACAAACCTACTCCCGCCTCCGTTTTTCCACCCGCAAACTTCAATTTTCTTCCCAGGAAATCTCCCCCAACGTCTCCGTTTGCCGCCAATTCCCCGAGGAGGAGAGGTCGAAAATTGTTACGCTCCTCAAGCAACTTTTTGCGGATGAATCTACGATTAGTGAAAAGAACGAGGGATGCACCAGCGATAAAGACGAGTGCCTTGTCCCTATCCACATTGGACGAGGTGGTGATGAAGCTGTGGTTGATGGAATCGATGTTTTTATCCAGAATATTCCTGTTGAAGTTGTCTCTGAGATGGCCGAACTAAAGAGAAAGAAACGCGGACGTCCTCGAAAGAATGAAAATCCAAGCAATGTTGCCATCCTGAATATTTCTCATGATGTTGTCCCTGGAATTGGCGAGCAAGGAAACAGGAAGCGAGGTCGGCCTCGTAAGAATGAAATCCAAGGTATGTGTATTTCAGCTGTTGGGAGCGAGACTGCAAGAAGAGAGTGTCTGGACGAGGCCATGGATATGGATAAAGAGAAGGTGATTGTTAATAAGCATGGAAATGTGATGGATTTGGCTGTGGGGAACACAGAGAATCGGTTTGGAGAGAAGAGAAAAAGGAAGCGAGGGCGGCCTCGTAAGAATGAAAATCTAGGTATCCACTATGCTCCTGTAGTGCACGAAACTGTGGGTAGAGAGCATGTGGGGGAGGCGAGGGATGTGGAGAAAGATGAACTGATTGTTATTCAGGAAGGAAATGTCATGGGCTTGGCTGCATCACTAAATACAGAGGATCATGACGGAGAGGAGCTAGGAGAGCAGAGAAAAAGGAAGCAAGGGCGGCCCTGTAAGAATGAAAATCATGGGATTCGTTATGTTCCTGTCGAGCACCAGACTTTAGGTAGAGAGCATGTAAAGGAGTCGTGGGATATGAAGACAGAGATGGTGACTGTTAATGAGAATGGCAATGTCGTCGACTTGGCTATGTTAGGACGTGTGGAAAATCCATTTGAAGAGGAGCTGAGGAAGAGGACAGAGGGGATGGAGACAGAGGCGGAGCTATTAGGGTTTTTAAGAGGTCTGGATGGGGATTGGGGGAGTTGGAGAGAGAGGAGGAAGATAGTTCGTGCCAGTGATTTTGGTGAAGTACTGCCCAAGGATTGGAGGCTTATACTTTCTCTCAAGAAGCGAAAAGGCATCGTATGGTTGCATTGCCACAGATATATAAGGTTTTTTTAA 1428 48.18 MGVVDPRSNEMLGLDFPPLLDLRLFSQSDLYSLSRASSSASIFHDNDDVLVPKIDRSLFNESAGSRKQTYSRLRFSTRKLQFSSQEISPNVSVCRQFPEEERSKIVTLLKQLFADESTISEKNEGCTSDKDECLVPIHIGRGGDEAVVDGIDVFIQNIPVEVVSEMAELKRKKRGRPRKNENPSNVAILNISHDVVPGIGEQGNRKRGRPRKNEIQGMCISAVGSETARRECLDEAMDMDKEKVIVNKHGNVMDLAVGNTENRFGEKRKRKRGRPRKNENLGIHYAPVVHETVGREHVGEARDVEKDELIVIQEGNVMGLAASLNTEDHDGEELGEQRKRKQGRPCKNENHGIRYVPVEHQTLGREHVKESWDMKTEMVTVNENGNVVDLAMLGRVENPFEEELRKRTEGMETEAELLGFLRGLDGDWGSWRERRKIVRASDFGEVLPKDWRLILSLKKRKGIVWLHCHRYIRFF 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4138066 4139493 - Bpe007105.1 Bpe14g00455 114764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00455 475 PRINTS AT-hook-like domain signature 171 181 IPR017956 GO:0003677
Bpe14g00455 475 PRINTS AT-hook-like domain signature 202 213 IPR017956 GO:0003677
Bpe14g00455 475 PRINTS AT-hook-like domain signature 267 277 IPR017956 GO:0003677
Bpe14g00455 475 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 185 - -
Bpe14g00455 475 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 201 266 - -
Bpe14g00455 475 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 266 334 - -
Bpe14g00455 475 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 185 IPR037472 -
Bpe14g00455 475 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 201 266 IPR037472 -
Bpe14g00455 475 SMART AT_hook_2 339 351 IPR017956 GO:0003677
Bpe14g00455 475 SMART AT_hook_2 269 281 IPR017956 GO:0003677
Bpe14g00455 475 SMART AT_hook_2 204 216 IPR017956 GO:0003677
Bpe14g00455 475 SMART AT_hook_2 171 183 IPR017956 GO:0003677
Bpe14g00455 475 MobiDBLite consensus disorder prediction 326 348 - -
Bpe14g00455 475 Pfam AT hook motif 205 213 IPR017956 GO:0003677
Bpe14g00455 475 Pfam AT hook motif 172 182 IPR017956 GO:0003677
Bpe14g00455 475 Pfam AT hook motif 269 280 IPR017956 GO:0003677
Bpe14g00455 475 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 336 472 - -
Bpe14g00455 475 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 266 334 IPR037472 -
Bpe14g00455 475 MobiDBLite consensus disorder prediction 324 350 - -
Bpe14g00455 475 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 336 472 IPR037472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00455 - - - mnt:21386634 249.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00422 Bpe-Chr5:18603387 Bpe14g00455 Bpe-Chr14:4138066 4.30E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g414 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01114 Cam08g1570 Cec08g1140 Cco08g1267 Clacu08g1271 . Cre08g1052 . Cone7ag1595 Cone17ag1216 Cone20ag0509 . . . . . . . Bda13g01400 . Bpe14g00455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006623 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00455 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0