Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00469 ATGATTGTCATCACCCAAGCTTTTGCAGGTCATCTCGGCGACGTTCAGTTTGCTTCTGTCGCCATAGCTTGTACCATCATTGTGGCCTTCAATTTTGGTCTTTTTCTGGGAATGGCAAGCGCGCTGGAGACGCTCTGTGGCCAAGCGTATGGAGCCAAACAATATCAAATGTTGGGAATATATATGCAACGTTCTTGGATTGTTTTATTCGCTTGCGCCATTTTTCTATTGCCTATGTTTGTATTTGCTACTCCATTACTGAAGTTCATTGGTCAACCTGAGAATGTTGCCGAGCAGACGGGTTTGGTTGCGATGTGGTTGATTCCATTTCACCTGAGCTTTCCTTTTCAGTTCACTCTGCAGAGGTTCTTGCAGAGCCAGTTGAAGACTGGGGTGATAGCCTGGGTCTCCGGAGGGGCTTTTGTGCTACATTTGCTTGTGAGTTGGATTTTTGTTTATAAACTGAGGGTGGGGATTGAGTGGACTGCTTTGAGCATTGGTTTTTCATGGTGGGTTTCGGTTTTCGGAATGTTCGCCTATGTTATTTATGGCGGCTGTGCCAATACATGGACTGGTTTTTCTGTTCGAGCTTTTCATGGCCTTTGGCAGTTCTTCAAGCTTGCAGTGGCATCTGGCGTCATGCTCTTGTTGGAGAACTTCTACTACAGAGTACTAATCATAGTATCTGGCTATTTGCATGACGCAGAGGTTGCAGTGGATGCTCTTTCGATATGCATCAGCATTTATGGATGGGAATCTATGATTCCCCTGGGATTTTTGGCTGCAACCGGCGTACGTGTAGCAAATGAACTGGGTGCTGGCAATGGAAAAGGAGCAAAGTTTGCGACCGGTATTTCGGTGATGACATCTATGATAGTCGGGATTTTGTTTTGGTCGATTATCATGATCTTCCATGAAAAGCTGGCAATGATTTTTACCTCAAGTGTACCTGTAGTATCCAAGATCGATGAATTATCTGTCTTCCTTGCCCTCACCATACTTCTCAATTGTATACAACCTGTTCTTTCAGGGGTAGCAGTCGGATCTGGTTGGCAAGCTCTAGTTGCCTTCATAAACGTTGGGAGCTACTATTTGATTGGGGTCCCTCTCGGTGTTCTCATGGGATGGTGGTCGTCTTTCGGCTTCAAGGGTTTATGGGGTGGAATGATCTGTGGAACTGTGATTCAAACAATTGCACTGGCGATCGTGACCATGCGATGCGAATGGGAAGACGAGGTAAAAATTTCATGTGAAAAAACATATTGTCCAAATCGTAATCCGGAGACGAAGGAGCTTTGGCAAGTGATGGGTCGTTCCATTTTTAGCCGTCTGGCTGCCTACTCCATGAACGTCGTCACTCGAGCTTTTGTTGGCCACCTCGGCAACGCGCCGCTCGCTGCCATCACTCTGGCCAACAACGTCATCTCCGGTTTCAATTTCGGTCTCCTAGTCATTGACCTCTCTCTTCACAGTTACTTTTTTTTTCACTCTGTCTCTCTCCCGTTGAATCTTCGTAGACCAAACGCTGGTTAA 1533 46.12 MIVITQAFAGHLGDVQFASVAIACTIIVAFNFGLFLGMASALETLCGQAYGAKQYQMLGIYMQRSWIVLFACAIFLLPMFVFATPLLKFIGQPENVAEQTGLVAMWLIPFHLSFPFQFTLQRFLQSQLKTGVIAWVSGGAFVLHLLVSWIFVYKLRVGIEWTALSIGFSWWVSVFGMFAYVIYGGCANTWTGFSVRAFHGLWQFFKLAVASGVMLLLENFYYRVLIIVSGYLHDAEVAVDALSICISIYGWESMIPLGFLAATGVRVANELGAGNGKGAKFATGISVMTSMIVGILFWSIIMIFHEKLAMIFTSSVPVVSKIDELSVFLALTILLNCIQPVLSGVAVGSGWQALVAFINVGSYYLIGVPLGVLMGWWSSFGFKGLWGGMICGTVIQTIALAIVTMRCEWEDEVKISCEKTYCPNRNPETKELWQVMGRSIFSRLAAYSMNVVTRAFVGHLGNAPLAAITLANNVISGFNFGLLVIDLSLHSYFFFHSVSLPLNLRRPNAG 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4199550 4204532 - Bpe007119.1 Bpe14g00469 114778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00469 510 CDD MATE_eukaryotic 1 414 IPR045069 GO:0042910|GO:1990961
Bpe14g00469 510 TIGRFAM matE: MATE efflux family protein 4 386 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe14g00469 510 PANTHER PROTEIN DETOXIFICATION 426 484 - -
Bpe14g00469 510 PANTHER PROTEIN DETOXIFICATION 1 415 - -
Bpe14g00469 510 Pfam MatE 212 372 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe14g00469 510 Pfam MatE 4 150 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe14g00469 510 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 415 - -
Bpe14g00469 510 PANTHER MULTIDRUG RESISTANCE PROTEIN 426 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00469 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - pop:7486570 646.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00089 Bpe-Chr6:1226795 Bpe14g00469 Bpe-Chr14:4199550 6.42E-16 dispersed
Bpe13g00166 Bpe-Chr13:9474872 Bpe14g00469 Bpe-Chr14:4199550 1.23E-14 dispersed
Bpe14g00469 Bpe-Chr14:4199550 Bpe02g00407 Bpe-Chr2:2644526 1.02E-11 dispersed
Bpe15g00254 Bpe-Chr15:13868391 Bpe14g00469 Bpe-Chr14:4199550 1.17E-82 dispersed
Bpe10g00053 Bpe-Chr10:790747 Bpe14g00469 Bpe-Chr14:4199550 4.84E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1315 . . Cone20ag0535 . . . . Blo17g00107 . . Bda13g01375 . Bpe14g00469 . Bma02g00125 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00469 Bpe_Chr14 FPKM 8.56624 5.747817 11.694738 15.928854 22.404509 17.716337 19.303509 8.544991 9.828664 11.254806