Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00479 GTTGAGATGGATAATGGCATCGTCCAAGTGACACTATCGAACCCAGATGGAATTATCACTGGGATTAGATTTAATGGGATTGACAACCTGCTGGAAGTTCTCAACGACGAATCAAATAGAGGATATTGGGATCTTGTTTGGAGCTCACCAACCTCTACCACCACAACTGGGATTTTTGATGTGATCAAGGGGACAGATTTCAAAATTATAGTGCAGAATGAAGAACAGGTGGAGCTGTCTTTCGCAAGATCATGGGATGTCTCTCTTGAGGGCAAGCTCGTACCTTTAAACATTGATAAAAGGTTCATTATGCTTAGGGGTTCTTCTGGGTTTTACTCCTACGCCATTTATGAACACTTGAAAGAATGGCCTGGTTTCAATCTAGATGAAACTAGAATCGCATTCAAACTCAGAAAAGACAAGTTCCATTATATGGCCATAGCAGACGACAGGCAACGATTCATGCCTCTCCCTGACGATCGCTTGCCGTCAAGAGGCCAAGCTCTTGCCTATCCAGAGGCTGTTCTTCTTCTCAATCCCGTGGAGCCTGAGTTTAAAGGAGAGGTGGACGATAAGTACCAGTATTCTTGTGACAACAAAGATCTTCGAGTTCATGGTTGGATATCCACAGACCCACCGGTCGGATTTTGGCAAATCACGGCCAGTAATGAGTTCCGGTCTGGAGGACCCGTCAAACAGAATCTGACGTCACACGTCGGCCCGACCACCCTCGCCATGTTTCTCAGCGCTCACTATTCGGGATTAGATTTGGTGCCCAAATTTGGGTCGGGAGAGAGTTGGAAGAAAGTTTTTGGCCCTGTTTTTATCTACTTAAACTCTGTTTTCAACGGTGACGATCCATTTCTGCTCTGGGATGATGCCAAATTACAGACGATGATGGAAGAACAGAGCTGGCCGTATTCCTTCGTGTCGTCGGAGGACTTTCCGGCATCGGACCAGAGGGGTAATCTCAGAGGCAGGCTACTTATATTAGACAGGTACATTAGCGGCGACTGTATAGCAGCAAATGGTGCTTACGTTGGCCTAGCTCCTCCAGGAGATGCTGGTTCTTGGCAAAGAGAATGCAAGGAGTATCAATTTTGGACGAGAGCGGATGAAGAAGGTTTCTTTTCAATAATGGAAGTACGGGCCGGAGTTTATAAACTATATGCATGGGTTCCTGGGTTCATCGGAGATTACGCATACGACGTCGCCGTCGATGTTACGCCGGGATGTGAGATTGAGATGGGTGAAATTGTATATGAACCCCCAAGAGACGGTCCCACATTATGGGAAATAGGCGTTCCTGATCGATCAGCCGCAGAATTCTACGTCCCTGATCCAAATCCCATGTACATAAATAAGTTATACACAAACCACCCTCAAAGGTTTCTTCTTCTTCTTCTTCTTCCTCGTCGCCATTTCCGAAGATTCAGACAGTACGGGCTGTGGGAAAGATACACAGAGCTGTACCCAGATGGAGACTTGGTCTATACTGTTGGCGTCAGTGATTACTCTAAAGACTGGTTTTTTGCGCAAGTTCCAAGGAAGAAAGGAGACAATTCGTTTCAAGGTACGACCTGGCAAATCAGGTTCGAGTTAGAAGAAGTAGATTCGAATGCAACTTATAAACTCAGACTGGCTCTGGCTTCTGCAACTCTTGCTGAATTACAGGTTCGAGTGAATGATTCATCGGCAAGTTCTGCTCTATTTTCGAGTGGAATAATAGGAGGAGATAACTCCATAGCCCGACATGGAGTTCATGGGCTGTACTGGCTTTTCAACGTGGAAATAGGAGGAGAGATGTTTGTTGAAGGTGATAACATAATATTTTTGACACAGCCAAGTAGTAGCAGCCCTTTCCAAGGGATTATGTATGATTATATTCGCTTAGAGGGAGAAATGGCGACGTTCGAACTATATCGGAGGTCAACGATTGGAATGTGCCTGACTGAGACTTTGGATGAAATGGTCCAGAATGGTACGCTTAGTCCCGAGCTTGCCTTCCAGGTTCTTGTCCAGTTCGACAAGTCTATGACGGAAGCACTGGAAACCCAAGTAAAGAGCAAGGTCTCCATTAAGGGTCATCTCCACACATACCGATTCTGCGACAATGTTTGGACCTTTATCTTGCAAGACGCATTGTTCAAGAACGAAGAATGCCAGGAGAATGTTGGCAGAGTCAAAATAGTGGCATGTGATTCCAAGTTACTAACACAGTAA 2223 45.52 VEMDNGIVQVTLSNPDGIITGIRFNGIDNLLEVLNDESNRGYWDLVWSSPTSTTTTGIFDVIKGTDFKIIVQNEEQVELSFARSWDVSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPGFNLDETRIAFKLRKDKFHYMAIADDRQRFMPLPDDRLPSRGQALAYPEAVLLLNPVEPEFKGEVDDKYQYSCDNKDLRVHGWISTDPPVGFWQITASNEFRSGGPVKQNLTSHVGPTTLAMFLSAHYSGLDLVPKFGSGESWKKVFGPVFIYLNSVFNGDDPFLLWDDAKLQTMMEEQSWPYSFVSSEDFPASDQRGNLRGRLLILDRYISGDCIAANGAYVGLAPPGDAGSWQRECKEYQFWTRADEEGFFSIMEVRAGVYKLYAWVPGFIGDYAYDVAVDVTPGCEIEMGEIVYEPPRDGPTLWEIGVPDRSAAEFYVPDPNPMYINKLYTNHPQRFLLLLLLPRRHFRRFRQYGLWERYTELYPDGDLVYTVGVSDYSKDWFFAQVPRKKGDNSFQGTTWQIRFELEEVDSNATYKLRLALASATLAELQVRVNDSSASSALFSSGIIGGDNSIARHGVHGLYWLFNVEIGGEMFVEGDNIIFLTQPSSSSPFQGIMYDYIRLEGEMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAFQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEECQENVGRVKIVACDSKLLTQ 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4246968 4253207 + Bpe007128.1 Bpe14g00479 114788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00479 740 CDD RGL4_N 3 287 - -
Bpe14g00479 740 CDD TFIIA_gamma_N 638 685 IPR015872 GO:0005672|GO:0006367
Bpe14g00479 740 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 635 - -
Bpe14g00479 740 CDD RGL4_C 431 632 - -
Bpe14g00479 740 CDD TFIIA_gamma_C 691 736 IPR015871 GO:0005672|GO:0006367
Bpe14g00479 740 Gene3D - 334 416 - -
Bpe14g00479 740 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 686 736 IPR009088 GO:0005672|GO:0006367
Bpe14g00479 740 Pfam Polysaccharide lyase family 4, domain II 343 414 IPR029413 -
Bpe14g00479 740 CDD RGL4_M 320 419 IPR029413 -
Bpe14g00479 740 Pfam Polysaccharide lyase family 4, domain III 429 631 IPR029411 -
Bpe14g00479 740 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 638 688 - -
Bpe14g00479 740 SUPERFAMILY Starch-binding domain-like 363 413 IPR013784 GO:0030246
Bpe14g00479 740 Pfam Transcription initiation factor IIA, gamma subunit 694 735 IPR015871 GO:0005672|GO:0006367
Bpe14g00479 740 Gene3D - 689 739 IPR009088 GO:0005672|GO:0006367
Bpe14g00479 740 Gene3D - 637 688 IPR009083 GO:0005672|GO:0006367
Bpe14g00479 740 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 635 - -
Bpe14g00479 740 Gene3D - 1 261 IPR014718 GO:0030246
Bpe14g00479 740 Pfam Rhamnogalacturonate lyase family 1 189 IPR010325 -
Bpe14g00479 740 Gene3D - 427 632 - -
Bpe14g00479 740 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 638 683 IPR015872 GO:0005672|GO:0006367
Bpe14g00479 740 SUPERFAMILY Galactose-binding domain-like 426 632 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01142 Bpe-Chr2:15003523 Bpe14g00479 Bpe-Chr14:4246968 2.81E-71 transposed
Bpe04g00412 Bpe-Chr4:2597790 Bpe14g00479 Bpe-Chr14:4246968 0 transposed
Bpe08g00006 Bpe-Chr8:48871 Bpe14g00479 Bpe-Chr14:4246968 0 transposed
Bpe15g00269 Bpe-Chr15:14078914 Bpe14g00479 Bpe-Chr14:4246968 0 transposed
Bpe14g00479 Bpe-Chr14:4246968 Bpe02g01140 Bpe-Chr2:14996907 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00479 K18195 - qsu:112026520 1040.41