Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00482 ATGGCGGCTGCGAATCCTCAGCCTCTGCAGAGCCGTCCCTTCGACGACCATGTACGTGGTCTTATAACGATTGGAGAGGAAGACGACGACTATGAAGATGGAAGTGGCGATGCTCTGGATGATGTCCAGGATGCTCATATGAATTCGGTTAGCGTCGTTAACCATGATGGATTACAGGTAGCGTCACGGACTAGCGAACTTACGCTCTCTTTTGAAGGCGAGGTCTATGTCTTTCCCGCCGTCACGCCTGAAAAGGTGCAGGCAGTGCTTTTGCTTTTGGGGGGTCGTGATTTGCCAAGTGGCATGCGCGCAGTTGAAGTACCTTTTGATCAAAGTACCAGGGGAGTTATGGACCCTCCAAAACGCTCAAATCTCTCACGAAGAATAGCTTCCCTGGTTAGGTTTCGAGAAAAGCGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACCGTACGAAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGTCAATTTGCATCATTGAAAGAAAATTCGGGTGCTTCAAGTTGGGATTCTGCAGAGAATGGCCTACAAGATGGTGTTCGTTCAGAAACTGTTCTACGGAGATGTCAGCATTGTGGTGTTAATGAAAGTAATACCCCTGCAATGCGCCGTGGTCCGGCTGGACCAAGGACATTATGCAATGCATGTGGTCTGATGTGGGCAAATAAAGGTACTTTGAGAGATCTCAGCAAGGGTGGAAGGAGTATTTCTGTTGAACCTGAATCGTCAATGGATATCAAACCTTCTATAACAGAACCAGAAGTTTCTGATTACCAGGATGATCGTGGACCAGAGGATCCTGGTAAGGCTGTAACAGAATGTTCTAGTAATCCTTCTGTCCACCAACATCATGAAAATTTGCACCGAGATCTTATGGACTCTTTGCCCAAGCAAATGGACCATTCTTCAGGGAATGATGAGGAGCTGGAACAGGAACCATTGGGTGAACTTGGTACAGAGTTAGATATCCCTGCTAACTTTGTTTAG 1017 46.51 MAAANPQPLQSRPFDDHVRGLITIGEEDDDYEDGSGDALDDVQDAHMNSVSVVNHDGLQVASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDLPSGMRAVEVPFDQSTRGVMDPPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKENSGASSWDSAENGLQDGVRSETVLRRCQHCGVNESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSISVEPESSMDIKPSITEPEVSDYQDDRGPEDPGKAVTECSSNPSVHQHHENLHRDLMDSLPKQMDHSSGNDEELEQEPLGELGTELDIPANFV 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4304540 4308138 - Bpe007131.1 Bpe14g00482 114791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00482 338 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
Bpe14g00482 338 CDD ZnF_GATA 198 245 IPR000679 GO:0006355|GO:0043565
Bpe14g00482 338 Pfam tify domain 63 94 IPR010399 -
Bpe14g00482 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 246 - -
Bpe14g00482 338 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Bpe14g00482 338 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Bpe14g00482 338 Pfam CCT motif 128 169 IPR010402 GO:0005515
Bpe14g00482 338 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Bpe14g00482 338 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 337 - -
Bpe14g00482 338 ProSiteProfiles GATA-type zinc finger domain profile. 193 249 IPR000679 GO:0006355|GO:0043565
Bpe14g00482 338 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Bpe14g00482 338 MobiDBLite consensus disorder prediction 264 278 - -
Bpe14g00482 338 Gene3D - 191 249 IPR013088 GO:0006355|GO:0008270
Bpe14g00482 338 SMART tify_2 60 95 IPR010399 -
Bpe14g00482 338 PANTHER GATA TRANSCRIPTION FACTOR 28 1 337 IPR045280 GO:0006355
Bpe14g00482 338 MobiDBLite consensus disorder prediction 292 318 - -
Bpe14g00482 338 MobiDBLite consensus disorder prediction 239 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00482 - - - mcha:111004894 473.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00145 Bpe-Chr2:998149 Bpe14g00482 Bpe-Chr14:4304540 1.54E-69 dispersed
Bpe02g00146 Bpe-Chr2:1002727 Bpe14g00482 Bpe-Chr14:4304540 2.98E-139 dispersed
Bpe07g00312 Bpe-Chr7:2282903 Bpe14g00482 Bpe-Chr14:4304540 3.27E-69 dispersed
Bpe14g00482 Bpe-Chr14:4304540 Bpe07g00775 Bpe-Chr7:14232191 1.53E-10 dispersed
Bpe14g00482 Bpe-Chr14:4304540 Bpe04g00413 Bpe-Chr4:2603195 7.72E-70 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g00145 . 16 264 Tify Gene Family AT4G24470 53.3 1.7e-62 236.5
Bpe04g00413 BCT 65 257 Tify Gene Family AT4G24470 62.9 6.0e-60 228.0
Bpe14g00482 . 65 241 Tify Gene Family AT4G24470 52.2 4.3e-42 168.7
Bpe07g00312 . 89 279 Tify Gene Family AT1G51600 62.9 2.4e-58 222.6
Bpe14g00482 . 25 241 Tify Gene Family AT1G51600 52.2 1.6e-49 193.4
Bpe02g00146 BCT 24 245 Tify Gene Family AT1G51600 52.2 2.3e-48 189.5
Bpe04g00413 BCT 46 248 Tify Gene Family AT1G51600 52.9 3.9e-48 188.7
Bpe02g00145 . 16 264 Tify Gene Family AT4G24470 53.3 1.7e-62 236.5
Bpe04g00413 BCT 65 257 Tify Gene Family AT4G24470 62.9 6.0e-60 228.0
Bpe14g00482 . 65 241 Tify Gene Family AT4G24470 52.2 4.3e-42 168.7
Bpe07g00312 . 89 279 Tify Gene Family AT1G51600 62.9 2.4e-58 222.6
Bpe14g00482 . 25 241 Tify Gene Family AT1G51600 52.2 1.6e-49 193.4
Bpe02g00146 BCT 24 245 Tify Gene Family AT1G51600 52.2 2.3e-48 189.5
Bpe04g00413 BCT 46 248 Tify Gene Family AT1G51600 52.9 3.9e-48 188.7
Bpe05g00883 BCT 1 184 Tify Gene Family AT4G14720 53.1 3.4e-42 169.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22436 PF06203 CCT 1.30E-13 CL0281 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00482 Bpe_Chr14 FPKM 3.783942 4.702078 3.284704 3.462067 3.789151 4.356861 4.373781 4.871041 4.166203 4.565964