Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00484 AAGCAGAATCCGTCGACATTTCAAATTTTTAGAAGAGTACCTAGCCCAGCTTCTGTCTCTTCCAAATACAATATTTTCTTGTGCCAATCTGTACTGGTTCCAGGAGGAGGAAGTGGACCTTCTATTTTAAAATCTGCTACTCTGGTTTTGTCTAGATCATATGATGCTTTCTGTGGGAGCCTTCTAATCATTAAATTGATTCCAGCAATTGGTCTCATTGCCTTTGCTGCTTGGGGGGTTCAGCCTCTCATCCGTTTGAGCAGGAATTTATTTCTCCATACATCAGATAGTAATTGGAACAGAAGTAATATTTACTATGTCACAACGTCTTACATTCAGCCGGTGCTGCTATGGATTGGTGCTACATTAGTCTGCAGTGCATTAGATTCATTTGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTCTGAATTTTATACGGTCACTGTCAACAGTGCTTGCATTCGCCTATTGTTTGTCGAGCTTGATTCAACATGCACAAAAGTTTTTCGTTGAGACCAATGACTCTAGCGAGGCAAGAAATATGGGCTTCGATTTTGCTGGGAAAGCTGTTTATACAGCAGTATGGGTTGCTGCTTTATCACTGTTCATGGAGTTGCTTGGTTTCTCTACACAAAAGTGGCTAACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATATTTACAAATTTCCTTTCAAGCGTTATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATTCCAAATCACAAGTTCACTGTTAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGTCTTATTTAGCCATCAGTCACTTTGACGTCAACAAGATCAATAATATTGTAGCTGATATGCGCAAAGTTATAGCAAAAAATCCTCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTATATTGATCCTGAAAATCAAGCTCTCATGGTTCTGATTTCATGCTTTGTGAAAACGTCTCATTTTGAAGAGTACTTGTGCGTCAAGGAAGCAATTCTCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCACGGCTTGCTACTCCAATTCGCACAGTTCAGAAGATTTATAGAGAGGGTGACTTGGAAGAAGTAACTCTTGCCGATACCATATTCTCCCGTTCTACAGCAGCTAATGACCGTCCACTGCTACTCATTGAACCCTTGTATAAGATAAATAGTGATGACAAAAAGTCGTCTACTCGTTCCACACACTCAGACGATGAAAAGGACTCCAAGCAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAAACAGATGATAAGAGTGCAGCAAAATCAAATTCTCATTCTGGTCAAAATTTCAAATCTTCACAGGCACCAAAATTGGACTCTCAGACCCAGAATTCGCAGCTAGATAATTCAGAAGAGATAATTCCTGAAATGCCAGTGGTGAAGAGAGGAGTGAGAGGAAAAGAGGATGAAAATATGGAATACAAGTCCAATAACACTACCCCTAAAGGAGTGACATTGGAAAAGCCCCCTCTTTTGCCAGAATCAGACAGTGAACAAATAGACAAGTCATCTGTTGGTTTCCGTACAAAGCACGATGGTGAAGCCTTTTCAGCATCGCCTGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCAATTGAGGAAGAAATGCCTTCGCCTACAACACTTGAATCGAGAGAAATGTCTGCCCATCGTACTCCACTTTCGCAAATTAGTGAAGCTAAAGATGGTCAAATACCAATTGTTCCAAATGTGACAAAAAATGATTAA 1980 40.96 KQNPSTFQIFRRVPSPASVSSKYNIFLCQSVLVPGGGSGPSILKSATLVLSRSYDAFCGSLLIIKLIPAIGLIAFAAWGVQPLIRLSRNLFLHTSDSNWNRSNIYYVTTSYIQPVLLWIGATLVCSALDSFVLPSEASQAIKQRLLNFIRSLSTVLAFAYCLSSLIQHAQKFFVETNDSSEARNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKSYLAISHFDVNKINNIVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMVLISCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYREGDLEEVTLADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTHSDDEKDSKQEAASTSNMNASDKTDDKSAAKSNSHSGQNFKSSQAPKLDSQTQNSQLDNSEEIIPEMPVVKRGVRGKEDENMEYKSNNTTPKGVTLEKPPLLPESDSEQIDKSSVGFRTKHDGEAFSASPGISMPPLEENILLGVALEGSKRTLPIEEEMPSPTTLESREMSAHRTPLSQISEAKDGQIPIVPNVTKND 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4316303 4321717 + Bpe007133.2 Bpe14g00484 114793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00484 659 MobiDBLite consensus disorder prediction 491 521 - -
Bpe14g00484 659 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 17 649 - -
Bpe14g00484 659 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 17 649 IPR045042 -
Bpe14g00484 659 MobiDBLite consensus disorder prediction 531 545 - -
Bpe14g00484 659 Gene3D - 251 306 IPR023408 -
Bpe14g00484 659 Gene3D - 148 249 - -
Bpe14g00484 659 MobiDBLite consensus disorder prediction 451 471 - -
Bpe14g00484 659 MobiDBLite consensus disorder prediction 451 572 - -
Bpe14g00484 659 MobiDBLite consensus disorder prediction 625 643 - -
Bpe14g00484 659 SUPERFAMILY Sm-like ribonucleoproteins 235 305 IPR010920 -
Bpe14g00484 659 Pfam Mechanosensitive ion channel 192 399 IPR006685 GO:0016020|GO:0055085
Bpe14g00484 659 MobiDBLite consensus disorder prediction 613 659 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00484 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 809.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00484 Bpe-Chr14:4316303 Bpe02g01148 Bpe-Chr2:15058039 1.27E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00947 . 109 496 Mechanosensitive Ion Channel Family AT4G00290 59.6 1.5e-118 423.3
Bpe14g00484 . 18 648 Mechanosensitive Ion Channel Family AT5G10490 55.8 7.7e-182 634.0
Bpe14g00484 . 19 456 Mechanosensitive Ion Channel Family AT1G58200 69.9 1.5e-177 619.8
Bpe07g00704 CCT,ECH 63 923 Mechanosensitive Ion Channel Family AT1G53470 54.0 1.4e-247 852.8
Bpe15g00798 CCT,ECH 73 896 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.2e-245 845.5
Bpe07g00704 CCT,ECH 63 925 Mechanosensitive Ion Channel Family AT3G14810 52.5 3.1e-236 815.1
Bpe15g00798 CCT,ECH 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.7 2.1e-229 792.3
Bpe07g00704 CCT,ECH 63 924 Mechanosensitive Ion Channel Family AT1G78610 60.3 4.1e-281 964.1
Bpe15g00798 CCT,ECH 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 3.1e-260 894.8
Bpe15g00798 CCT,ECH 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.8 1.6e-224 776.2
Bpe07g00704 CCT,ECH 221 920 Mechanosensitive Ion Channel Family AT2G17000 58.3 2.3e-223 772.3
Bpe04g00114 . 83 776 Mechanosensitive Ion Channel Family AT5G12080 57.0 1.3e-214 743.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00484 Bpe_Chr14 FPKM 29.283632 33.444225 21.485033 19.542595 11.58071 11.559939 11.509863 8.773102 8.812261 9.548666