Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00493 ATGGGGAAGGGGAAGATCGTGATACGAAGGATCGATAATTTGTCGAATAGACAGGTGACGTTCTCGAAGCGGAGGAACGGATTGCTGAAGAAGGCAAAGGAGCTAGCGATCCTTTGCGATGCCGAGGTAGGAGTCATTATCTTTTCCAGCACAGGCAAGCTCTACGATTACGCCAGTACCAGCATGAAATCCGTAACTGAAAGATACAACAAGACCAGAGAAGACCATCATCAGCTTGAAAACCCAACATCTGAGGTCAAGTTCTGGCAAAGGGAAGCGGGTCAGTTTTGGCAGCAACTACATAATTTGCAAGAAAACCACAGGCAGATTATGGGGGAAGAGCTATCTGGTTTGAGCGTCAAAGATCTACAAAGTCTGGAGAACCAACTGGAAAGTAGTCTTCGAGGAGTCCGTATGAAAAAGGTTTGA 429 46.39 MGKGKIVIRRIDNLSNRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDYASTSMKSVTERYNKTREDHHQLENPTSEVKFWQREAGQFWQQLHNLQENHRQIMGEELSGLSVKDLQSLENQLESSLRGVRMKKV 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4388416 4401521 + Bpe007143.1 Bpe14g00493 114802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00493 142 Pfam K-box region 83 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe14g00493 142 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe14g00493 142 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe14g00493 142 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe14g00493 142 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Bpe14g00493 142 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe14g00493 142 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe14g00493 142 ProSiteProfiles K-box domain profile. 86 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe14g00493 142 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bpe14g00493 142 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 141 - -
Bpe14g00493 142 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 141 - -
Bpe14g00493 142 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Bpe14g00493 142 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00148 Bpe14g00493 CCT
Bpe02g01163 Bpe14g00493 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00493 Bpe-Chr14:4388416 Bpe14g00611 Bpe-Chr14:5079086 6.99E-48 dispersed
Bpe14g00486 Bpe-Chr14:4328779 Bpe14g00493 Bpe-Chr14:4388416 1.68E-26 proximal
Bpe12g00712 Bpe-Chr12:12675896 Bpe14g00493 Bpe-Chr14:4388416 1.13E-29 transposed
Bpe14g00493 Bpe-Chr14:4388416 Bpe02g01163 Bpe-Chr2:15251324 1.29E-92 wgd
Bpe14g00493 Bpe-Chr14:4388416 Bpe02g00148 Bpe-Chr2:1012227 9.87E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22440 PF01486 K-box 5.40E-18 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00493 K09264 - jre:109004814 234.572