Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00506 ATGAGAGAGTGCATATCGATTCACATCGGTCAGGCCGGTATTCAGGTCGGAAATGCTTGCTGGGAACTGTACTGCCTCGAGCATGGGATTCAGCCCGATGGCCAAATGCCAAGTGACAAAACAGTAGGCGGAGGGGACGATGCCTTCAACACTTTTTTCAGTGAAACCGGAGCTGGGAAGCATGTGCCTCGTGCCATTTTTGTTGATCTTGAGCCCACTGTCATCGATGAAGTGAGGACTGGATCATACCGCCAACTCTTTCATCCTGAACAACTCATCAGCGGCAAGGAAGATGCTGCCAACAACTTCGCCCGTGGACATTATACTATGTTATGTCTTTTGACAGTTGGGAAAGAAATTGTTGATCTCTGCTTGGATCGGATTAGAAAGCTTGCCGACAATTGCACTGGTCTCCAGGGTTTCTTGGTTTTCAATGCAGTCGGTGGTGGTACCGGATCGGGACTTGGGTCACTTCTCCTGGAGCGACTCTCTGTTGATTATGGCAAAAAATCGAAGCTCGGGTTCACAGTCTATCCTTCACCTCAGGTTTCTACTTCAGTTGTAGAACCCTACAACAGCGTCCTTTCAACCCACTCTCTTCTTGAGCATACAGATGTCGCTGTGCTTCTTGACAACGAGGCCATCTATGACATCTGTAGGCGCTCCCTTGACATCGAACGCCCCACTTACACCAATCTCAATCGTCTGGTTTCTCAGGTGATTTCATCCCTTACTGCCTCATTAAGGTTCGATGGTGCCCTCAATGTTGATGTTACTGAGTTCCAGACCAACTTGGTCCCCTACCCCAGGATCCATTTCATGCTTTCCTCATACGCCCCCGTCATCTCGGCTGAGAAGGCATACCATGAGCAGCTATCCGTAGCTGAAATTACTAACAGCGCTTTTGAACCTGCTTCCATGATGGCAAAGTGTGACCCACGCCATGGTAAGTACATGGCATGTTGCTTGATGTACCGAGGTGATGTTGTCCCGAAGGATGTTAATGCAGCAGTAGCCACCATTAAGACAAAGCGAACCATACAGTTTGTAGACTGGTGTCCTACTGGATTCAAGTGTGGCATCAATTACCAGCCACCTACTGTAGTACCAGGTGGTGACCTTGCAAGGGTGCAGAGAGCTGTGTGCATGATCTCCAACTCAACCAGTGTTGCAGAAGTATTCTCCCGCATTGACACCAAGTTCGATCTTATGTATGCCAAGCGTGCTTTTGTGCACTGGTATGTTGGTGAGGGGATGGAGGAAGGAGAGTTCTCAGAGGCTCGGGAGGATCTAGCTGCTCTTGAGAAGGATTATGAGGAGGTTGGTTTAGAGTCTCCTGATGGGGACGAAGGAGATGAACCGGAGGATTACTGA 1374 49.13 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTMLCLLTVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNSTSVAEVFSRIDTKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGLESPDGDEGDEPEDY 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4482137 4484325 + Bpe007156.1 Bpe14g00506 114815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00506 457 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 148 154 IPR017975 GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 SMART Tubulin_C_4 254 399 IPR018316 -
Bpe14g00506 457 Gene3D Helix hairpin bin 390 442 IPR023123 -
Bpe14g00506 457 PANTHER TUBULIN ALPHA CHAIN 1 453 - -
Bpe14g00506 457 Pfam Tubulin/FtsZ family, GTPase domain 3 219 IPR003008 GO:0005525
Bpe14g00506 457 PANTHER TUBULIN 1 453 IPR000217 GO:0005874|GO:0007017
Bpe14g00506 457 Gene3D - 275 389 IPR037103 -
Bpe14g00506 457 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 250 IPR036525 -
Bpe14g00506 457 SUPERFAMILY Tubulin C-terminal domain-like 252 441 IPR008280 -
Bpe14g00506 457 SMART Tubulin_4 49 252 IPR003008 GO:0005525
Bpe14g00506 457 CDD alpha_tubulin 2 441 - -
Bpe14g00506 457 Gene3D Tubulin/FtsZ, GTPase domain 1 274 IPR036525 -
Bpe14g00506 457 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Tubulin signature 386 414 IPR000217 GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Tubulin signature 159 180 IPR000217 GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Tubulin signature 140 158 IPR000217 GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Tubulin signature 114 138 IPR000217 GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Tubulin signature 184 197 IPR000217 GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Tubulin signature 198 218 IPR000217 GO:0005874|GO:0007017
Bpe14g00506 457 Coils Coil 424 444 - -
Bpe14g00506 457 PRINTS Alpha-tubulin signature 280 295 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 428 444 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 353 366 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 366 385 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 126 134 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 154 166 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 167 178 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 327 348 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 391 407 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 PRINTS Alpha-tubulin signature 220 232 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Bpe14g00506 457 Pfam Tubulin C-terminal domain 269 398 IPR018316 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00506 K07374 TUBA; tubulin alpha - dcr:108227517 856.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01727 Bpe14g00506 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00293 Bpe-Chr7:2116573 Bpe14g00506 Bpe-Chr14:4482137 0 dispersed
Bpe08g00321 Bpe-Chr8:1899641 Bpe14g00506 Bpe-Chr14:4482137 0 dispersed
Bpe14g00506 Bpe-Chr14:4482137 Bpe08g01390 Bpe-Chr8:14849218 2.01E-123 dispersed
Bpe14g00506 Bpe-Chr14:4482137 Bpe02g01172 Bpe-Chr2:15402529 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g577 . . Bda01g00928 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00080 Blo18g00091 . . Bpe02g01727 Bpe14g00506 Bma01g00727 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00506 Bpe_Chr14 FPKM 8.387848 8.371942 12.195245 13.037099 13.988247 13.381436 12.696494 11.660629 10.963454 12.577436