Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00520 ATGGCCGAATCGGGAACCTCTCCTCACTGCAAATTGTCCGGTAAAGTTGTCTCAGTCGCTGCCGGCGAATCTCACACCCTCGCTCTCACCGGAGATGGATGCGTCTATTCATGGGGAAAGGGAATGTTTGGGCGTCTCGGCACTGGTTCTGAAACCGATGAGTTTTCTCCCGTTCTAGTCAATTTCGAAATGGAAGAAGAGAAGCTCAAATTCGTAGGAGTGGCTGCTGGTGCTTATCACAGTCTCGCTCTTGCAAGTAATGGTTCAGTTTGGTCCTGGGGTTTCAACGTCTATGGTCAACTTGGTTTCAATGGCGAGAATCGTCCCCGACCTTGTTTGCTTAAGAATTTCTGTGAGAGCTGTTCTTCTGATTCTTCGACCAACGAGTCAGATGCAGAAATTAAACTGCCATTAAAGTTTTGTCTGGTTAAAGCCGGTGGAATGATGTCTCTTGCGATTGACAATCACGGAGTCCTCTGGATGTGGGGCGATTTTCCGGACCCAAATGCCACCAACGAAGGCCAGTTCTCTCTTACAAGTAGTTTCATTCCGACCCCTATCCGGAATTTTTATGGAATCACTGTTGTTAAAGTTGGATGTGGAAATGAACATGTAGCTGTTCTTGTTAGTTTTGGAGAAACCCACAATGTTGAAGATTTGGCTTGCTGCTCTTGGGGAAACAACAGCCATGGCCAATTAGGACTCGGGGATAGAGAGAGCCGGCAGAATCCGCAGGTCATCGAAAAGTTCAACAAAGAATCTCCTTGGAAAGTTTATGAGGTAGCTTGTGGGGCGTCCCACACAGCTCTGCTAAGTCACAGAAAGTGTTCAAATGGAAAAATAGAGAGTCTATGCTGGACTTTCGGTCTAGGAGAAAACGGGCAGCTCGGACACGGAATGACCCGAAGTGAATCGCTTCCTCAACCTGTTAAAGAATTGCCAAATGATGTAGAGCTGATTTCTGTGGACTGTGGATTGTTTCACACTAGTGTTGTATCATCGGATGGTGATGTATGGTCTTGGGGGATGGAGAAGGGTCTCGGGCTATGCCCAAATGCTTGTTTTGCTGGCACTGATGCAGGAGATGCTCTCTCTCCCTTGTTGATCTCTAAATTTGTAAATCCCATTCAGGTGGCATGTGGGGCCGCACATACTGTTGCTGTCGCACATTCTGGATTTAAGCTCTGGTCATGGGGAATAGGAAGAAATGGAGTTCTTGGAAATAATAAGACAACAGATTGCTATGCACCACAACCTTTGCTGTGGCCTCCAATGGAGGTTTTCAAGCTAGAAGAACCAAATACAAACCGGGAGGAAATCAAAACCAGAGAAGAAACTCTTTCAGAGAAGGAAGATGAAAAGGAAATGGATAATAAAGTGTCTGTCTTGATGGGAGAAATGAGGATTCTTCGAGAGAGACTTTCACTGGTGGAGAAGTATGCTAGTGTTCTTCACAGTTGTGTGTTTGGAAAACCATTGGCGGAGAAAGACATTCCTGATTCGTTGCAGAGAATTGGTAGCTTAGAGATTGGAAGAGAGTGGGAAAACATGTTGGAGGAGGCGGATCGACCAAAGCTTGTTCGGTTGGAAGCGTTTTACCGGAATATGCTCGGTGATGTTAAAGACAAGCTATTGAAGAGAAAGGTCCAGGAGCTTATCAAGGATTGCCTCCATTCTTCATCAACTACTTGA 1692 45.86 MAESGTSPHCKLSGKVVSVAAGESHTLALTGDGCVYSWGKGMFGRLGTGSETDEFSPVLVNFEMEEEKLKFVGVAAGAYHSLALASNGSVWSWGFNVYGQLGFNGENRPRPCLLKNFCESCSSDSSTNESDAEIKLPLKFCLVKAGGMMSLAIDNHGVLWMWGDFPDPNATNEGQFSLTSSFIPTPIRNFYGITVVKVGCGNEHVAVLVSFGETHNVEDLACCSWGNNSHGQLGLGDRESRQNPQVIEKFNKESPWKVYEVACGASHTALLSHRKCSNGKIESLCWTFGLGENGQLGHGMTRSESLPQPVKELPNDVELISVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPNACFAGTDAGDALSPLLISKFVNPIQVACGAAHTVAVAHSGFKLWSWGIGRNGVLGNNKTTDCYAPQPLLWPPMEVFKLEEPNTNREEIKTREETLSEKEDEKEMDNKVSVLMGEMRILRERLSLVEKYASVLHSCVFGKPLAEKDIPDSLQRIGSLEIGREWENMLEEADRPKLVRLEAFYRNMLGDVKDKLLKRKVQELIKDCLHSSSTT 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4570930 4573137 - Bpe007170.1 Bpe14g00520 114829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00520 563 Gene3D - 4 217 IPR009091 -
Bpe14g00520 563 Gene3D - 218 441 IPR009091 -
Bpe14g00520 563 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 220 274 IPR000408 -
Bpe14g00520 563 PRINTS Chromosome condensation regulator RCC1 signature 90 106 IPR000408 -
Bpe14g00520 563 PRINTS Chromosome condensation regulator RCC1 signature 388 409 IPR000408 -
Bpe14g00520 563 PRINTS Chromosome condensation regulator RCC1 signature 71 84 IPR000408 -
Bpe14g00520 563 PRINTS Chromosome condensation regulator RCC1 signature 34 50 IPR000408 -
Bpe14g00520 563 PRINTS Chromosome condensation regulator RCC1 signature 325 343 IPR000408 -
Bpe14g00520 563 PRINTS Chromosome condensation regulator RCC1 signature 157 173 IPR000408 -
Bpe14g00520 563 PRINTS Chromosome condensation regulator RCC1 signature 198 214 IPR000408 -
Bpe14g00520 563 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 335 IPR000408 -
Bpe14g00520 563 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 19 29 IPR000408 -
Bpe14g00520 563 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 33 87 IPR000408 -
Bpe14g00520 563 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 9 561 - -
Bpe14g00520 563 SUPERFAMILY RCC1/BLIP-II 12 116 IPR009091 -
Bpe14g00520 563 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 74 84 IPR000408 -
Bpe14g00520 563 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 157 211 IPR000408 -
Bpe14g00520 563 Pfam Regulator of chromosome condensation (RCC1) repeat 285 331 IPR000408 -
Bpe14g00520 563 Pfam Regulator of chromosome condensation (RCC1) repeat 87 152 IPR000408 -
Bpe14g00520 563 Pfam Regulator of chromosome condensation (RCC1) repeat 32 84 IPR000408 -
Bpe14g00520 563 Pfam Regulator of chromosome condensation (RCC1) repeat 224 271 IPR000408 -
Bpe14g00520 563 Pfam Regulator of chromosome condensation (RCC1) repeat 335 388 IPR000408 -
Bpe14g00520 563 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 261 271 IPR000408 -
Bpe14g00520 563 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 391 IPR000408 -
Bpe14g00520 563 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 88 156 IPR000408 -
Bpe14g00520 563 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 561 - -
Bpe14g00520 563 SUPERFAMILY RCC1/BLIP-II 135 424 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00520 - - - qsu:111998155 726.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00520 Bpe-Chr14:4570930 Bpe10g00274 Bpe-Chr10:10092131 4.25E-19 dispersed
Bpe14g00520 Bpe-Chr14:4570930 Bpe06g00309 Bpe-Chr6:14421684 1.93E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g284 . . . . . . . . . . . . . Car12g00232 . . . Bhi04g00858 . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00520 . . Bma02g00084 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00520 Bpe_Chr14 FPKM 1.341026 1.068489 2.375028 2.322765 2.72326 3.31353 4.337914 2.727734 3.097996 3.471955