Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00557 ATGATTCTTCACTCGCCTCTGAGGAAGAAGGCGAGAGCTACGCTGACGGAGAAGGGGAATGAGATTCTCATACCCGAGGATGGAATGGAGGGAGAGGATTCGAACAGCGTTGATCTGGTGACGAAGAAGACGACTATTGTGATTGAGTATTGCATACATCACCCTGCGATCCAAAAAACGGCCATGCTGGTGAAAGAGGCTTTAGAGGAGGGTGTTGATGGTATCGCATTGCTGGTTAATCCGGAGAAGCCAAGGAAGAGCTCCTTTGAAATCAGAGAGAATGATGGCGAGAAGTTTGTCAGTCTTCTGAACATGATGCAACCATCTACCCAAATGAAGAATCTAGACGTGGAGAAAGTCATTTCTGACATTATTGCCAAGATCAATGAAAAGATTATCTTATCCAAGGAGGGAATGGAGGGAGAGGATTCAAACAGCGTGGATCAGATGATGAAGAAGAGGACCATTGTGATTGAGTACTGCAAACAACAACCCACCATTAAAACAATGGCCACGCAGGTGAAAAAGGCTTTAGAGGAAGGCGTTGATGGTATCACATTGCTGGTTAATCCAGAGAAGCCAAGAAAGGGTTGCTTTGAAATTCGAGAGAATGGTGGCGAGAAGTTCGTCAGTCTTCTGAACATGAAGCGACCATCCACCCAACTGAAGAATTTAGACGTGGAGAAAGTCATTTCTGACATAATTGCCAAGTTTAAAGGATGA 723 44.81 MILHSPLRKKARATLTEKGNEILIPEDGMEGEDSNSVDLVTKKTTIVIEYCIHHPAIQKTAMLVKEALEEGVDGIALLVNPEKPRKSSFEIRENDGEKFVSLLNMMQPSTQMKNLDVEKVISDIIAKINEKIILSKEGMEGEDSNSVDQMMKKRTIVIEYCKQQPTIKTMATQVKKALEEGVDGITLLVNPEKPRKGCFEIRENGGEKFVSLLNMKRPSTQLKNLDVEKVISDIIAKFKG 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4768911 4772653 - Bpe007206.1 Bpe14g00557 114866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00557 240 PANTHER SELENOPROTEIN H 139 239 - -
Bpe14g00557 240 PANTHER SELENOPROTEIN H 32 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00557 - - - cit:102611303 125.561
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01221 Bpe14g00557 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe14g00557 Bpe-Chr14:4768911 Bpe02g01221 Bpe-Chr2:15853583 6.28E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g216 . . . . Bpe02g01221 . . . . Cmo12g00237 . . . Car12g00270 . Cpe07g00247 . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00053 Bda01g00969 . Bpe14g00557 . Bma01g01306 . . . . . . . . . . . . . . . . . . . . . . . . . Csa02g02330 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008510 1 1 1 1 2 0 2 1 1 1 0 1 1 2 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00557 Bpe_Chr14 FPKM 174.873566 202.368591 168.508682 175.852478 147.147064 126.734741 140.924118 297.211365 310.62616 285.320343