Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00577 ATGCTGTCTCAACTGTTGAAGACTAAGCGTTTTGGTTTGATCGCCACCACTGCGTCGAGCAGAGGTGACACAATCAACAAAAGAGCAGCAGAGCAGAGCTGCTTGTCCCTTCTCCAAGCCTGCGATAAATTTCCAAAACTCACCCAAGTTCATGCTTATATTCTCAAGGTTGGACTCCTTAACAATCCGCTTGTTCTCACAAAGTTTGCCTCCACTTCATCTGACATTAATGCAATCGATTACGCTTCCTGTTTTCTGTTCTCTTCGGACGCCGACACCAGTCTTTATGATGTGTTCCTCTTCAATACCGTCATTAGAGCCTACGCTCAATCTGCTCACTCGAAGAGCAAAGCTTTATCGGTGTACAGTACTATGCTTCGGCGTGAAATTTTGCCCAACAAATTTACTTACCCATTTGTTCTCAAGGCCTGTGCTGGTCTAAAGCTACTTGATTTGGGTCAATCAGTTCATGGGTCGGCTGTAAAACTTGGGTTCGATGGCGATGTTCATGTTCAGAATACTTTGATTCACATGTACTGCTGTGGCGAAGAAGGAATAAAGATTGCACGGAAGCTGTTCGATGCAATGCCTAAATCGGACTCTGTATCGTGGAGTGCAATGATCGGAGGCTATGCTCGTCTGGGATTTTCAACAGAGGCAGTTTCATTGTTTAGAGAGATGCAAGTGATGGAGGTTCCACCAGACGAGATCACCATGATCTCCGTTCTTTCTGCTTGCACGGATTTAGGCGCACTTGAACTAGGGAAATGGCTCGAGCATTATATCGAGAAAGCAAGAATTCAAAAACCTATAGAACTTTGTAATGCACTGATCGACATGTTTGCAAAATGTGGGGATGTAAATAAAGCTTTGATCTTGTTCAGAAATATGAGCAAGAAGACAATAGTTTCTTGGACATCTGTCCTTGTGGGTATGGCCATGCATGGCCGAGGTCTGGAAGCAATATCTTTATTTGAAGAGATGATCAAAGATGGAGTTGCTCCTGACGATGTTGCCTTTATTGGGTTGCTTTCTGCTTGTAGTCATGCCGGGTTAGTAGAAAGAGGCCGAAGCTATTTTCATTCAATGACGAATAGCTACGGAGTTGTGCCTAAGATAGAACACTATGGATGCATGGTCGATATGATATGCAGGGCTGGACACGTCAAGGAAGCCGTAGATTTCATTAATAAAATGCCGATCAAACCAAACTCGATAATTTTACGAACCCTAGTGAGTGCTTGTCGTGCTCATGGCCAGCTTGCGCTGGGGGAGAAAATCACCAAACAATTAATCAGATGCGAGCCAATGCGAGAGTCAAATTACGTCTTGCTTTCGAATATCTACGCAATAATGACTCAGTGGGAGGCAAAAACAGAGATTAGAGAGGTGATGGACATGAAAGGGATGAAGAAGATACCAGGGAGCACAATGGTGGAGCTGGGTGGCGAGATCTACGAGTTTGTGGCTGGAGATAAATCGCAGAAACAGCAGAAGGAAATATATGAGATGGTGGATGAGATGGGGAGGGAGATGAAGAGGGCTGGTTATCTTCCAACTACATCTGAGGTATTGCTGGACATCAATGAGGAGGATAAGGAGGATGCTTTGAATAGACACAGTGAAAAACTCGCCATTGCTTTTATGCTTCTCAACACCCCACCAGGAAGTCCAATTCGGATAGTGAAGAATTTGAGAATATGCGGGGACTGCCACTCGGCTACCAAGTTCATCTCTATGATTTACTCTCGAGAAATAGTAGTCCGGGATCGAAACAGGTTTCACCATTTCGAGAATGGGTTCTGCTCCTGCAGAGATTTCTGGTGA 1827 44.55 MLSQLLKTKRFGLIATTASSRGDTINKRAAEQSCLSLLQACDKFPKLTQVHAYILKVGLLNNPLVLTKFASTSSDINAIDYASCFLFSSDADTSLYDVFLFNTVIRAYAQSAHSKSKALSVYSTMLRREILPNKFTYPFVLKACAGLKLLDLGQSVHGSAVKLGFDGDVHVQNTLIHMYCCGEEGIKIARKLFDAMPKSDSVSWSAMIGGYARLGFSTEAVSLFREMQVMEVPPDEITMISVLSACTDLGALELGKWLEHYIEKARIQKPIELCNALIDMFAKCGDVNKALILFRNMSKKTIVSWTSVLVGMAMHGRGLEAISLFEEMIKDGVAPDDVAFIGLLSACSHAGLVERGRSYFHSMTNSYGVVPKIEHYGCMVDMICRAGHVKEAVDFINKMPIKPNSIILRTLVSACRAHGQLALGEKITKQLIRCEPMRESNYVLLSNIYAIMTQWEAKTEIREVMDMKGMKKIPGSTMVELGGEIYEFVAGDKSQKQQKEIYEMVDEMGREMKRAGYLPTTSEVLLDINEEDKEDALNRHSEKLAIAFMLLNTPPGSPIRIVKNLRICGDCHSATKFISMIYSREIVVRDRNRFHHFENGFCSCRDFW 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4887249 4889075 + Bpe007226.1 Bpe14g00577 114886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00577 608 PANTHER - 32 594 - -
Bpe14g00577 608 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 594 - -
Bpe14g00577 608 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Bpe14g00577 608 TIGRFAM PPR: pentatricopeptide repeat domain 100 133 IPR002885 -
Bpe14g00577 608 TIGRFAM PPR: pentatricopeptide repeat domain 273 300 IPR002885 -
Bpe14g00577 608 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Bpe14g00577 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 300 IPR002885 -
Bpe14g00577 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Bpe14g00577 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 132 IPR002885 -
Bpe14g00577 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Bpe14g00577 608 Pfam PPR repeat family 200 246 IPR002885 -
Bpe14g00577 608 Pfam PPR repeat family 97 145 IPR002885 -
Bpe14g00577 608 Pfam PPR repeat family 301 348 IPR002885 -
Bpe14g00577 608 Pfam E motif 419 480 IPR046848 -
Bpe14g00577 608 Pfam DYW family of nucleic acid deaminases 516 608 IPR032867 GO:0008270
Bpe14g00577 608 Pfam PPR repeat 375 399 IPR002885 -
Bpe14g00577 608 Pfam PPR repeat 274 300 IPR002885 -
Bpe14g00577 608 Gene3D Tetratricopeptide repeat domain 271 499 IPR011990 GO:0005515
Bpe14g00577 608 Gene3D Tetratricopeptide repeat domain 97 270 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00577 - - - pper:18792090 931.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00802 Bpe-Chr8:9976623 Bpe14g00577 Bpe-Chr14:4887249 2.12E-170 dispersed
Bpe08g01189 Bpe-Chr8:13591877 Bpe14g00577 Bpe-Chr14:4887249 1.98E-120 dispersed
Bpe11g01079 Bpe-Chr11:8103392 Bpe14g00577 Bpe-Chr14:4887249 3.34E-24 dispersed
Bpe12g00530 Bpe-Chr12:11209051 Bpe14g00577 Bpe-Chr14:4887249 5.24E-154 dispersed
Bpe14g00577 Bpe-Chr14:4887249 Bpe01g00489 Bpe-Chr1:3108510 2.67E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g465 . . . . . . . . . Cmo12g00282 . . . Car12g00314 . . . Bhi04g00972 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01266 Bpe14g00577 . . . . . . . Cma12g00333 . . . . . . . . . . . . . . . . . . Lsi08g01196 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00577 Bpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.246449 0.822543 0.422143 0.0 0.0 0.0