Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00585 ATGATCCAGAGGCGGAGTCCTCCCACCCACAGGCACGATGGGACTTCTCCCCTTCCTCTTGGCATGGATTGGAGCCCTCCCCCTCGTAAATGGAATGGAAAGAACACTATTTGGCCGCATGATCCTCGCACTGGATGGAGCTACTGCGTGACAATTCCCTCGTGGGTTGTTCTTCCAAAATCCAGGGATTCAGATCCTGTTGTGGAACAGTTTTATAGGGTTCATGTTGGCATCCAATCACCCGAAGGTATCACGACAACGCATAGAGTATTAAGAAGATTCAACGATTTCATGAAGTTATTTACTGATTTGAAAACTGCATTTTCCAAGAAAAGTATCCCAACAGCTCCACCTAAAGGGCTCTTGCGGATGAAAACTCGAGCACTGTTAGAAGAGGTGGGCAATCTGGCATATAGATGTGCGTCATTTTTTCTCAAGAGAAGTACATGCAGGAAATGCCCGGAAAATTACTTTGATGTGAATATTTGTTTTCTTTCATCTGCTTTGTTGCAGAGAAAATTCTCTTTGGAGGAGTGGATGACTAAGCTGCTTTGTGATATTGACATATCAAGAAGTGTAGCTGTGGCATCCTTTCTTGAGCTTGAAGCTGCTGCTAGGTCTTCATTCGAGGATGACACTAAACAAACGACAGAAACAAATACTACATCCAATATCACTTTTTCTCCACAACAATTACCTCAGTTAGGTTTATCTGTTGTGACTGGTAGCTCATCATCAGTCACGCCTGATTATGGTAGCGACACTGCTTATGAAACATCAGAGCTTGGCACACCAACAGCAGGGAGGGATGAAAACTCTGAAATTGCTGAGGATTTAACATTGGATGAAGATATGACCGGTCCCATAGAAAAGCTGGTGAAGTGCAGCGTCTCAAATATTGACGAGGGACTATTTATGGGACAGACCATTTTAGAACAGCTAGAAGGCGCTCCACGGCATAAAGTACATGCTAGGCTTATGAACAATATTCTGAAGGATGCATATAATGGAAATAGTTCAAATGCTCTATTTCTGGTTAACAATGGTTTGGAGCTTTTCTCGGAGCCAGAGCGTAGTAATATAACTAATCATGCTCGCAAAGCCTCTAATGAGAGTGTTGGAAGTGACACAAGCTCTCTCAGAGGTAGTGAAATGTCGAGTTCTGGGATTCCAAATTCATCCGTTGATGGCTCTCATGAACTCCCTGGAGGTGTTGATTCAAGTGCCATTAGAATACAGGGGAACACTGAGTTTCAGCTTTCAATTGACACACAAGTGGTTCTCCCTCTAGATCAGCGCCAGAAAATGAATAGGGTTCTTTTGACAATGCAGAGAAGGCTAGTTACTGCAAAAAATGATATGGAGGATCTCATAGGTAGATTAAATCAAGAAATAGCCGGGAAAGATTACCTTACTACAAAGGTTAAGGATTTGGAAGAGGAACTTGAAACCACCAAGCAAAAAAGTAAAGAAAATCTTCAGCAAGCTCTATTAATTGAGAGGGAAAGGGTTACCCAAATGCAGTGGGATATGGAAGAACTTCGTCACAAATCTTTCGAAATGGAGTTGAAATTGAAGTCTGAACAGGGTAAAAGTTCATCTCATAACGAGGAAGATGCCATACAACAAAAATTGAATACGGCCAAAGAGCGGCTTAATAAATTGTCAAAGCAGTATGAAGAGCTGGAAGCAAAATCAAAAGCAGAGACAAAGTTACTTGTTAAAGAGGTCAAATCTCTTCGAAGGTCCCAAGCCGAATTGAAACAGGAACTTGCTAATTCCCGTAAGAAGTCGGAGGCAGAGGTATTGTTTTCATAA 1818 42.08 MIQRRSPPTHRHDGTSPLPLGMDWSPPPRKWNGKNTIWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVEQFYRVHVGIQSPEGITTTHRVLRRFNDFMKLFTDLKTAFSKKSIPTAPPKGLLRMKTRALLEEVGNLAYRCASFFLKRSTCRKCPENYFDVNICFLSSALLQRKFSLEEWMTKLLCDIDISRSVAVASFLELEAAARSSFEDDTKQTTETNTTSNITFSPQQLPQLGLSVVTGSSSSVTPDYGSDTAYETSELGTPTAGRDENSEIAEDLTLDEDMTGPIEKLVKCSVSNIDEGLFMGQTILEQLEGAPRHKVHARLMNNILKDAYNGNSSNALFLVNNGLELFSEPERSNITNHARKASNESVGSDTSSLRGSEMSSSGIPNSSVDGSHELPGGVDSSAIRIQGNTEFQLSIDTQVVLPLDQRQKMNRVLLTMQRRLVTAKNDMEDLIGRLNQEIAGKDYLTTKVKDLEEELETTKQKSKENLQQALLIERERVTQMQWDMEELRHKSFEMELKLKSEQGKSSSHNEEDAIQQKLNTAKERLNKLSKQYEELEAKSKAETKLLVKEVKSLRRSQAELKQELANSRKKSEAEVLFS 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4916684 4920668 - Bpe007234.1 Bpe14g00585 114894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00585 605 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 3 132 IPR044588 GO:0015031
Bpe14g00585 605 Coils Coil 538 572 - -
Bpe14g00585 605 MobiDBLite consensus disorder prediction 214 228 - -
Bpe14g00585 605 SUPERFAMILY PX domain 41 202 IPR036871 GO:0035091
Bpe14g00585 605 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 169 603 - -
Bpe14g00585 605 MobiDBLite consensus disorder prediction 240 272 - -
Bpe14g00585 605 Coils Coil 577 597 - -
Bpe14g00585 605 Coils Coil 468 495 - -
Bpe14g00585 605 MobiDBLite consensus disorder prediction 240 267 - -
Bpe14g00585 605 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 169 603 IPR044588 GO:0015031
Bpe14g00585 605 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 3 132 - -
Bpe14g00585 605 MobiDBLite consensus disorder prediction 1 26 - -
Bpe14g00585 605 SMART PX_2 50 202 IPR001683 GO:0035091
Bpe14g00585 605 MobiDBLite consensus disorder prediction 361 407 - -
Bpe14g00585 605 Gene3D - 60 213 IPR036871 GO:0035091
Bpe14g00585 605 MobiDBLite consensus disorder prediction 209 228 - -
Bpe14g00585 605 MobiDBLite consensus disorder prediction 585 605 - -
Bpe14g00585 605 MobiDBLite consensus disorder prediction 361 395 - -
Bpe14g00585 605 Pfam PX domain 86 200 IPR001683 GO:0035091
Bpe14g00585 605 ProSiteProfiles PX domain profile. 50 206 IPR001683 GO:0035091
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00585 - - - qsu:111986638 760.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00693 Bpe-Chr6:17541319 Bpe14g00585 Bpe-Chr14:4916684 1.37E-144 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g498 . . . . . . . . . . Cma01g01508 . Car09g00394 . . . Cpe06g00330 . . . . . . . Cla05g01730 Cam05g1843 Cec05g1855 Cco05g1915 Clacu05g1831 Cmu05g1714 Cre05g1845 . Cone7ag1693 Cone17ag1014 Cone20ag0354 Lsi04g02120 Csa03g04325 Chy04g00375 . Blo17g00016 . . Bda13g01255 Bpe14g00585 . . Bma02g00020 Sed05g1708 Cmo01g01563 Cmo09g00456 Cma09g00449 . . . . Cpe02g00446 Bhi09g02227 Tan01g3629 Cmetu04g2606 . Hepe01g2012 Mch11g0548 . . . . . . . . . . . Cme04g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006027 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00585 Bpe_Chr14 FPKM 1.417351 1.391104 4.838728 4.716524 0.94873 0.923729 0.612581 15.120151 17.535902 15.704635