Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00611 ATGGAGGGATCTGCCTCTTCCCAGAGGAAAATGGGCAGAGGAAAGATCGAGATTAAGCGGATCAAAAACACTACGAATCGGCAAGTTACCTTCTGTAAGCGACGCAATGGGCTGCTGAAGAAAGCTTATGAATTGTCTGTTTTGTGCGATGCGGAAGTTGCACTCGTTGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCCAATAATAGTGTAAGAGGGACTATAGAAAGGTATAAGAAAGCCTACTCAGACTCTTCCAGCACACCCACAGTTGCTGAAACTAGTACTCAGTTTTACCAGCAAGAAGCATCCAAACTAAGAAGACAGATCCGAGATATCCAGGCTTCAAACAGGCATATAACTGGAGAAGCCCTCAGCTCATTGTCGTTTAAGGATTTGAAGAATCTGGAGGGAAGATTGGAGAAAGGAATCAGTCGAATCCGAGCCAAAAAGGTATGA 462 45.24 MEGSASSQRKMGRGKIEIKRIKNTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRGTIERYKKAYSDSSSTPTVAETSTQFYQQEASKLRRQIRDIQASNRHITGEALSSLSFKDLKNLEGRLEKGISRIRAKKV 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5079086 5081092 - Bpe014002.1 Bpe14g00611 114920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00611 153 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 8 152 - -
Bpe14g00611 153 SUPERFAMILY SRF-like 12 85 IPR036879 GO:0003677|GO:0046983
Bpe14g00611 153 Pfam K-box region 94 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe14g00611 153 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 152 - -
Bpe14g00611 153 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Bpe14g00611 153 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Bpe14g00611 153 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Bpe14g00611 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Bpe14g00611 153 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Bpe14g00611 153 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Bpe14g00611 153 ProSiteProfiles K-box domain profile. 97 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe14g00611 153 ProSitePatterns MADS-box domain signature. 13 67 IPR002100 GO:0003677|GO:0046983
Bpe14g00611 153 CDD MADS_MEF2_like 12 88 IPR033896 GO:0000977|GO:0045944
Bpe14g00611 153 Gene3D - 24 87 IPR036879 GO:0003677|GO:0046983
Bpe14g00611 153 Coils Coil 97 117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01163 Bpe-Chr2:15251324 Bpe14g00611 Bpe-Chr14:5079086 4.65E-49 dispersed
Bpe14g00493 Bpe-Chr14:4388416 Bpe14g00611 Bpe-Chr14:5079086 6.99E-48 dispersed
Bpe14g00611 Bpe-Chr14:5079086 Bpe03g00324 Bpe-Chr3:4797532 7.40E-44 dispersed
Bpe02g01071 Bpe-Chr2:13324724 Bpe14g00611 Bpe-Chr14:5079086 2.53E-68 transposed
Bpe14g00611 Bpe-Chr14:5079086 Bpe07g00511 Bpe-Chr7:10389657 1.84E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22451 PF01486 K-box 4.70E-19 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00611 K09264 - ath:AT3G58780 250.366