Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe14g00783 ATGGGGGGGAACAAAGGAGGTTCCTCGTGGTTGACTGCTGTGAAAAGGGCTTTTAGATCTCCTTCAAAGGATGACGAAGAAAAGAAGAGGGAGAAGCGGAGGTGGAGTTTCAGAAGACAGCAGTCCAATCTACAGGAAATCAAGGCGACCCAAGAGCAGAATCCATTAAAGCCAGCATCTGAAGAGCAGAAGCGCCGCGTCACCGCCGTGGTTCGGCTGAACAAGCCCTGTCATGGCGCTAGAGAGCACTACTACGCCATTTTGATACAAACTTCCTTTAGAGGGTACCTGGCCAGGAGAGCTCTACGAGCGCTGAAAGGGCTGGTGAAACTGCAGGCGCTGGTGAGGGGTCACAATGTGAGAAAGCAAGCGAAAATGACCCTTAAATGCATGCAAGCCCTCGTTAGAGTCCAAGCCAGAGTGATAGATCAGCGAATCAAACTCACCCACGAAACCTCCAATGTCAAATCTTCCATCTGCAACATAAACAGTGCCATAGAATCTCGCTACCTTCGAGACATTTCAGACAGAAAATCCATCTCTCAGTCAAGAGAGGGAAGTAGAAGTACAATACCTGATGATTGGGATGAACGTTCTCACACAATCGAAGAAGTTAAAGCAATGTTGCAACAGAGGAGAGATCAAATCGCCATGAACCGTGATCGATCCTTGTCGCAAGCTTTTTCTCAGCAGATTATGAGAGCTTCGAGGAATCCATCAATGGGAAGCGAATGTGAGCTAGACGACAGGTCAAAGTGGCAAGATCAATTAATGAGAAGGAAGCCATGGGAGAGCAGGGGAAGAGCTTCAACTGACCAGAGAGCTGATTCCATCAAAACAGTCGAAATCGACACTTCTCTTCCGTACACATACTTGGCGCCTAATTTCCAAAGAGCACCACAAAATCAACACAATCTTCAACAAATATCTAATCCGCACTCTATTTCTTCTCCAGTCCACCACAGATCCTACAAAACCTCATCCCCCCACAACAATGCCTCTTTCACTCCATCTCCGTCCAAAGCCAGACCTCTACTCGTCCGATCCGCCAGCCCTCGCTGCATCAGAGAAGAAAAACCCTTCCCAACCTCCCAAACACCAAGCCTCAAGTCCAATTATTACTACAGCATGCAGAATCAAAGCAGAGGAGGAGGAAGTAGCACTGCTGCAAACAACGTCGGAGCTTCGTTACCAAACTACATGGCAGCGACTGAATCAGCGAAGGCAAGAGTGCGTTCTCAGAGCGCCCCGAAGCAAAGACAGTCAAGGCCGTCGACACCGGAGAGGGAAAGAAGCGGATCAGCGAGGAAGCGCCTTAATTTTCCAGGTGGGGAAAGGTACGGAGGTTTGGGGCAGAATCTGAAGAGCCCGAGCTTCAAGAGCGGGAACGGGGAGCAGGTGGGGATAGAGCAGCAGTCCAATTACTCTTCGTGCTGCACGGAGAGCTTTGGCTGTGAGATTTCTCCTTCGTCGACGAGTGATCTGAGGAGGTGGTTGAGATAA 1503 49.57 MGGNKGGSSWLTAVKRAFRSPSKDDEEKKREKRRWSFRRQQSNLQEIKATQEQNPLKPASEEQKRRVTAVVRLNKPCHGAREHYYAILIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLKCMQALVRVQARVIDQRIKLTHETSNVKSSICNINSAIESRYLRDISDRKSISQSREGSRSTIPDDWDERSHTIEEVKAMLQQRRDQIAMNRDRSLSQAFSQQIMRASRNPSMGSECELDDRSKWQDQLMRRKPWESRGRASTDQRADSIKTVEIDTSLPYTYLAPNFQRAPQNQHNLQQISNPHSISSPVHHRSYKTSSPHNNASFTPSPSKARPLLVRSASPRCIREEKPFPTSQTPSLKSNYYYSMQNQSRGGGSSTAANNVGASLPNYMAATESAKARVRSQSAPKQRQSRPSTPERERSGSARKRLNFPGGERYGGLGQNLKSPSFKSGNGEQVGIEQQSNYSSCCTESFGCEISPSSTSDLRRWLR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5953139 5955055 + Bpe014161.3 Bpe14g00783 115092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe14g00783 500 MobiDBLite consensus disorder prediction 301 339 - -
Bpe14g00783 500 MobiDBLite consensus disorder prediction 234 253 - -
Bpe14g00783 500 MobiDBLite consensus disorder prediction 258 279 - -
Bpe14g00783 500 PANTHER IQ-DOMAIN 5-RELATED 3 500 - -
Bpe14g00783 500 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 3 500 - -
Bpe14g00783 500 Pfam IQ calmodulin-binding motif 86 103 IPR000048 GO:0005515
Bpe14g00783 500 Pfam IQ calmodulin-binding motif 109 125 IPR000048 GO:0005515
Bpe14g00783 500 MobiDBLite consensus disorder prediction 177 197 - -
Bpe14g00783 500 MobiDBLite consensus disorder prediction 404 467 - -
Bpe14g00783 500 ProSiteProfiles IQ motif profile. 82 110 IPR000048 GO:0005515
Bpe14g00783 500 MobiDBLite consensus disorder prediction 18 39 - -
Bpe14g00783 500 MobiDBLite consensus disorder prediction 301 345 - -
Bpe14g00783 500 MobiDBLite consensus disorder prediction 1 63 - -
Bpe14g00783 500 MobiDBLite consensus disorder prediction 40 57 - -
Bpe14g00783 500 Gene3D - 78 141 - -
Bpe14g00783 500 SMART iq_5 104 125 IPR000048 GO:0005515
Bpe14g00783 500 SMART iq_5 81 103 IPR000048 GO:0005515
Bpe14g00783 500 ProSiteProfiles IQ motif profile. 106 133 IPR000048 GO:0005515
Bpe14g00783 500 MobiDBLite consensus disorder prediction 408 422 - -
Bpe14g00783 500 Pfam Protein of unknown function (DUF4005) 351 451 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe14g00783 - - - qsu:112008332 564.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00495 Bpe-Chr2:3201970 Bpe14g00783 Bpe-Chr14:5953139 3.24E-30 dispersed
Bpe03g00205 Bpe-Chr3:2449734 Bpe14g00783 Bpe-Chr14:5953139 1.20E-62 dispersed
Bpe04g00965 Bpe-Chr4:6581849 Bpe14g00783 Bpe-Chr14:5953139 2.90E-159 dispersed
Bpe11g00883 Bpe-Chr11:6512334 Bpe14g00783 Bpe-Chr14:5953139 6.07E-30 dispersed
Bpe14g00783 Bpe-Chr14:5953139 Bpe01g00561 Bpe-Chr1:3654680 1.60E-21 dispersed
Bpe14g01207 Bpe-Chr14:9009013 Bpe14g00783 Bpe-Chr14:5953139 3.25E-20 dispersed
Bpe14g00783 Bpe-Chr14:5953139 Bpe14g00792 Bpe-Chr14:6008693 2.57E-16 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01589 . 1 463 IQD Protein Family AT5G03040 51.2 1.2e-106 383.6
Bpe04g01873 . 1 462 IQD Protein Family AT3G52290 52.6 3.5e-95 345.5
Bpe11g00883 . 1 379 IQD Protein Family AT3G22190 58.5 1.3e-94 343.6
Bpe02g00495 . 1 438 IQD Protein Family AT2G26180 59.5 2.7e-116 415.6
Bpe04g00122 . 1 274 IQD Protein Family AT2G26180 65.2 2.4e-77 286.2
Bpe01g00879 . 33 252 IQD Protein Family AT2G33990 57.2 2.7e-58 222.2
Bpe03g00849 . 66 242 IQD Protein Family AT2G33990 52.0 2.7e-45 179.1
Bpe01g00879 . 24 225 IQD Protein Family AT3G15050 52.8 4.9e-52 201.4
Bpe14g00783 . 3 500 IQD Protein Family AT4G00820 50.4 6.2e-110 394.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe14g00783 Bpe_Chr14 FPKM 0.589126 0.0 0.604661 0.185364 2.419801 2.752423 2.173732 0.0 0.0 0.0